Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq520 246 3e-60 seq1210 205 1e-47 seq6 84.2 2e-11 >seq520 Length=294854 Score = 246 bits (272), Expect = 3e-60 Identities = 558/835 (67%), Gaps = 13/835 (2%) Strand=Plus/Plus Query 23200 CTATTCATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTA 23259 |||||||||||| ||| |||||||||||||| || | || ||||| || || || Sbjct 261784 CTATTCATAACAGAAGCTTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTC 261843 Query 23260 CCCTCTAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTA 23319 |||| | ||| || |||||| ||||||| ||||| | |||||| | | | Sbjct 261844 CCCTGAAGTGAAATCAATTCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTTCCA 261903 Query 23320 CATGATAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCA 23379 || | ||| || | ||||| || ||||| ||||||||||||| |||||||||| Sbjct 261904 CAACCAAGTTCACCCAATAATCTATCAGCAACAAACTCAATATATTGACTCATCAAATCA 261963 Query 23380 TAGTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAA 23439 ||| || || | | |||| ||| ||| | | ||| | | ||||| | Sbjct 261964 CCGTTCATTCCAACCAAAGCACAAGGAAGCGCTTCACAAACAAATTCTCTCTCAATTTCA 262023 Query 23440 ACAGCATCTTTAATTAT---TTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATAC 23496 || ||||| || || || ||| ||||||||| || | | | ||| | Sbjct 262024 ACCGCATCACGAACAATAGTTTTCACACGC---TCTTCACTAAGTTTCTTTCTCAAAAGC 262080 Query 23497 TTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTA 23556 | | | |||||| |||||||||||||| || ||||| || | ||| | || || Sbjct 262081 GAATAAAGTAAACAAGCAAAATCACAATGAAGACCTTCGTCACGTGAAATAAGCTCGTTT 262140 Query 23557 GAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTG--CAGCAAATG 23614 ||||| ||||| || |||||||| || |||||||||| |||||| |||| ||| || | Sbjct 262141 GAAAAAGTTAAACCAGGCATTAAACCACGTTTTTTAAGCCAAAAAATTGAACAGAAACTA 262200 Query 23615 ATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTG 23674 ||||| || || ||||| |||||| ||||| || || | | | | |||||| Sbjct 262201 --CCGGAGAAAAATATACCTTCAACACAAGCAAAAGCAACGATTCTTTCAGCAAATGAAT 262258 Query 23675 CATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTG 23734 || |||| |||||||| | | ||||| ||| ||| | ||| ||| | Sbjct 262259 CAGATGAATCG---ATCCATTTCATAGCCCAATCAGCTTTCTTGGCAATACAAGGAATCG 262315 Query 23735 TTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTA 23794 | |||||||| | || | | | | ||||| | ||| | ||||| || ||||| | Sbjct 262316 TGTCAATTGCATGAAATAAACGATTCTTTTCGATAGAATCATTGATATAAGTCTCAATCA 262375 Query 23795 GTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATC 23854 | ||||||||||||||||||||| |||||||| || ||||| || || ||||| | Sbjct 262376 AGAGACTATACATTTCAGAATGAATGTTTTCAATCGCGATCTGGAAACCGTAAAAGGCAC 262435 Query 23855 TAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATAC 23914 || ||||| | |||||| || || | |||||| || | ||| || || |||| Sbjct 262436 GTGCCTCAGAGACTTGAACTTCTTTCATGAATCTTCCGGCAAGATTCTCCAAGACTATAC 262495 Query 23915 CATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATA 23974 | || || ||||||||||||||||| | | || || || | ||| | | || Sbjct 262496 CGTCGGAGGCGGCAAAGAAAGCAAGAACGTGTGAGATGAAGTGACGTTCGCCGTCGGTTA 262555 Query 23975 ATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAA 24029 || ||||| | | || ||||| ||| | ||| ||||| || ||||||| || Sbjct 262556 GGTTGTTCCAGTGAGGAAGATCTTGTGAGAGATCGACTTCTTCTGCTGTCCAGAA 262610 >seq1210 Length=122563 Score = 205 bits (226), Expect = 1e-47 Identities = 552/839 (66%), Gaps = 19/839 (2%) Strand=Plus/Minus Query 23200 CTATTCATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTA 23259 |||||||||||| ||| ||||| || ||||| || | || ||||| || || || Sbjct 43145 CTATTCATAACAGAAGCTTTCTGATACTCGCCAACGCGCTTCTCAAAAAAGTTAGTTTTC 43086 Query 23260 CCCTCTAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTT- 23318 |||| | || || ||||| ||||||| ||||| | |||||| | ||| Sbjct 43085 CCCTGAAGCGAAATCAAATCCATCCAATCAAAAGGATTCTGAACATTATAAAT---TTTC 43029 Query 23319 --ACATGATAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAA 23376 ||| | || || | ||||| || ||||| |||||||| |||| ||||||| Sbjct 43028 CCACAACCAAGCTCACACAACAATCTATCAGCAACAAACTCAATATACTGACTCATCAAA 42969 Query 23377 TCATAGTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATG 23436 ||| || || || | || |||| ||| || | | ||| | | || || Sbjct 42968 TCACCATTCATTCCAACTAAAGCGCAAGGAAGCGCTTCGCAAACAAATTCTCTCTCGATC 42909 Query 23437 GAAACAGCATCTTT---AATTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTAAA 23493 ||||||||| ||| | | ||| ||||| ||| || | | | ||| Sbjct 42908 TCAACAGCATCGCGCACAATCGTCTTCACACGC---TCTTCGCTAAGTTTCTTTCTCAAA 42852 Query 23494 TACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCA 23553 | | | | ||||| |||||||||||||| || ||||| || | ||| | || Sbjct 42851 AGCGAATAAATCAAACAAGCAAAATCACAATGAAGTCCTTCGTCACGTGAAATAAGCTCG 42792 Query 23554 TTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAAT 23613 || ||||| ||||| || |||||||| || |||||||||| ||| || |||||| || Sbjct 42791 TTTGAAAAAGTTAAACCAGGCATTAAACCACGTTTTTTAAGCCAGAAAATTGCACAGAAA 42732 Query 23614 GATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTT 23673 ||| || || || ||||| |||||| ||||| || || | | | | |||||| Sbjct 42731 CTTCCAGAGAAAAATATACCTTCAACACAAGCAAAAGCAACGATCCTTTCAGCAAATGAA 42672 Query 23674 GCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATT 23733 || |||| |||||||| | | ||||| ||| ||| | | | ||| ||| Sbjct 42671 TCAGATGAATCG---ATCCATTTCATAGCCCAATCAGCTTTCTTTGTAATACAAGGAATC 42615 Query 23734 GTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATT--ATCTGTTATATATGTATCAA 23791 ||||||||||| | || | || | || |||| | | ||| | ||||| || |||| Sbjct 42614 GTTTCAATTGCATGAAACA--AACGATTCTTCTCAACTGAATCATTGATATAAGTCTCAA 42557 Query 23792 TTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAAC 23851 | | | |||||||||||||||||||||||| || || || ||||| || || || ||| Sbjct 42556 TCAAGAGACTATACATTTCAGAATGAATATTCTCGATTGCGATCTGGAATCCGTAGAAAG 42497 Query 23852 ATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAA 23911 | || || || | |||||| || || | |||||| || | ||| || || | Sbjct 42496 CACGCGCCTCTGAGACTTGAACTTCTTTCATGAATCTTCCTGCAAGATTCTCCAAGACGA 42437 Query 23912 TACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTG 23971 | || || ||| |||||||| |||||||| | | ||||| || | ||| | | Sbjct 42436 TGCCGTCGGAAGCGGCAAAGAAGGCAAGAACGTGTGAGATAAAGTGGCGTTCGCCGTCGG 42377 Query 23972 ATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAA 24030 || || ||||| | || || ||||| |||||||| ||||| || | ||||| ||| Sbjct 42376 TTAGGTTGTTCCAGTGATGAAGATCTTCCGATAAATCGACTTCTTCGGCGGTCCAGAAA 42318 >seq6 Length=1263909 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 23509 CATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAAT 23568 || ||||||||||| || || || ||||| ||| || | |||||| || ||||| | Sbjct 1160352 CAAGCAAAATCACAGTGAAGACCCTCATCTCTAGAGATTAGTTCATTTGAGAATGTCAGA 1160411 Query 23569 CCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCA 23607 |||||||||||||||| ||||||| ||| ||||| ||| Sbjct 1160412 CCTGGCATTAATCCTCTCTTTTTAAGCCAGAATATGGCA 1160450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521309233913600