Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1436 107 2e-18 seq1039 89.7 5e-13 seq1740 86.0 6e-12 seq322 86.0 6e-12 >seq1436 Length=88924 Score = 107 bits (118), Expect = 2e-18 Identities = 164/230 (71%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | || || || || ||| || || || ||||| || |||| Sbjct 38992 GCCGCCACGGAGACGGAGGACGAGGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCGGC 39051 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || |||| ||||| || || |||||||| || || ||||||||||| | || Sbjct 39052 AAGAGTTCGGCCGTCTTCGAGTTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGTGG 39111 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | ||||||| | || |||| |||| ||| | | | |||||| || || | Sbjct 39112 AATTCCTTCCTTGT-CTTGGATTTTGGCTTTGACGTTGTCGATGGTGTCGGAGGATTCTA 39170 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | ||||| ||||| || || || || || ||||| ||||||||| Sbjct 39171 CCTCTAGGGTTATGGTTTTGCCGGT-AGGGTTTTCACGAAGATCTGCATG 39219 >seq1039 Length=240209 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||||||| || ||| |||||||| ||||| || || | | ||| || | || ||| Sbjct 128866 ACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGCCAAGGTACGGCCATCTTCG 128925 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||| || || || |||| | || || |||| ||||| | |||||| ||| || Sbjct 128926 AGCTGCTTTCCAGCAAAAATCAACCTTTGCTGATCCGGGGGAATTCCCTCCTTATCC-TG 128984 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTATCGT 41829 | || || | || | | | ||||| ||| ||| ||||||| ||||| || Sbjct 128985 TATCTTAGCCTTCACATTGTCAATCGTGTCTGAGCT---CTCAACCTCCAAAGTTATTGT 129041 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || |||||||||||||| Sbjct 129042 CTTACCGGTAAGAGTTTTCACGAAAATCTGCAT 129074 >seq1740 Length=56962 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||| || ||| |||||||| ||||| || || | | ||| || | || || Sbjct 22101 ACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGCCAAGGTCCGGCCATCTTCC 22042 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 | ||| || ||||| || |||| | ||||| || | ||||| | |||||||||| || Sbjct 22041 AACTGTTTCCCGGCAAAAATCAACCTTTGTTGATCTGGGGGAATACCCTCCTTGTCC-TG 21983 Query 41774 ATTTTTTGCTTCAACGACGACAC-AGTGTC---GCTCGACTCCACCTCCACCGTTATCGT 41829 | | || || | || | || |||||| |||| || ||||||| ||||| || Sbjct 21982 AATCTTAGCCTTCACATTGTCAATAGTGTCTGAGCTC---TCAACCTCCAAAGTTATTGT 21926 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| || ||||||||||| Sbjct 21925 CTTTCCGGTAAGAGTCTTCACAAAAATCTGCAT 21893 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||| || || |||||||| ||||| || || | | || || | || || Sbjct 42789 ACAAGATGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGCCAATGTTCGGCCATCTTCA 42848 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||| || || || |||| | || ||||||| |||| || |||||||||| | Sbjct 42849 AGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGG 42908 Query 41774 ATTTTTTGCTTCAACGACGACACA-GTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 || || |||| || | || ||||| ||| ||||||| || || ||||| Sbjct 42909 ATCTTA-GCTTTTACATTGTCAATCGTGTCTGAACTCTCAACCTCCAAAGTAATGGTTTT 42967 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| |||||||| ||||||||||| Sbjct 42968 CCCTGTCAATGTCTTTACAAAAATCTGCAT 42997 >seq322 Length=397916 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || | || ||||| || || || |||||||| || ||||| || | Sbjct 333182 GCCACCACGAAGCCTCAAAACCAGGTGGAGAGTAGATTCCTTCTGGATATTATAATCAGC 333241 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || | | || || | |||||||||||| || || || | ||| |||||| || Sbjct 333242 CAGAGTACAACCATCTTCCAACTGCTTGCCGGCAAAAATTAGCCTCTGCTGGTCCAGAGG 333301 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | ||| || ||| ||| ||||||||| || | | | ||| ||| ||| | Sbjct 333302 AATACCCTCTTTATCC-TGAATTTTTGCTTTCACATTGTCAATAGTATCGAAACTCTCAA 333360 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| ||||| || || || || || ||||| || ||||| ||||| Sbjct 333361 CCTCCAAAGTTATGGTCTTTCCAGTAAGGGTCTTAACAAAAATTTGCAT 333409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462145522188800