Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Utricularia_20gibba_20[genbank_20GCA_5F002189035.1_202017-06-12] 518 sequences; 100,688,548 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1 116 4e-21 seq255 114 1e-20 seq482 111 2e-19 seq3 107 2e-18 seq415 87.8 2e-12 >seq1 Length=8502017 Score = 116 bits (128), Expect = 4e-21 Identities = 156/213 (73%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | ||||||||||| || || |||||||| ||||| || ||| |||| || Sbjct 7226594 ACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCTGCCAGGGTGCGCCCGTCCTCG 7226535 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| || ||||| || | || |||||| || | || | || |||||| ||| | Sbjct 7226534 AGCTGCTTCCCGGCGAAGATCAATCTCTGCTGATCTGGGGGGATGCCCTCCTTATCCTGG 7226475 Query 43095 ATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 43150 ||||| || | ||| | | | ||||| |||| || || || | |||||||| Sbjct 7226474 ATTTTCGCCTTCA-CGTTGTCGATGGTGTCTGAGCTC---TCGACCTCTAGAGTGATGGT 7226419 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || || ||||| |||||||| ||||| Sbjct 7226418 TTTCCCGGTGAGGGTCTTCACAAAGATCTGCAT 7226386 Score = 113 bits (124), Expect = 5e-20 Identities = 153/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | ||||||||||| || || ||||| ||||| || || || |||| || Sbjct 7226366 ACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTCCTCG 7226307 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| || || || ||||| ||||||||||| | || | || ||| ||||| | Sbjct 7226306 AGCTGCTTTCCGGCAAAGATGAGCCGCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGG 7226247 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTT 43151 || || ||||| | | | ||||| ||| ||| || || | |||||||| Sbjct 7226246 ATCTTCGCTTTGACGTTATCGATAGTGTCCGAGCT---TTCAACCTCAAGGGTGATGGTC 7226190 Query 43152 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || ||||| |||||||| ||||| Sbjct 7226189 TTACCCGTGAGGGTCTTCACAAAGATCTGCAT 7226158 Score = 96.9 bits (106), Expect = 4e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||||||||| ||||| || || || ||||| | || || |||||||| || ||||| Sbjct 712118 TCCTTTTGAATGTTGTAGTCGGCGAGCGTCCGTCCATCCTCAAGCTGCTTCCCGGCGAAG 712177 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | |||||||| |||| || | | ||||||||| ||| | || | | ||| Sbjct 712178 ATCAACCGCTGCTGATCGGGAGGGATCCCTTCCTTGTCC-TGAATCTTGGCCTTCACGTT 712236 Query 43113 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | |||||| || ||||| || | ||| || || || |||||||| || || || Sbjct 712237 GTCGATGGTGTCGGAAGACTCCACCTCCAGCGTAATCGTCTTCCCCGTTAGGGTTTTCAC 712296 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 712297 GAAGATCTGCAT 712308 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||||||||| || |||| | || || |||||||| ||||| || Sbjct 7226804 TCCTTCTGGATGTTGTAATCAGCAAGGGTCCTTCCATCCTCAAGCTGCTTCCCAGCAAAG 7226745 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | | |||||| || | || | | |||||||||| |||||| || | ||| Sbjct 7226744 ATCAACCTCTGCTGATCTGGAGGAATCCCCTCCTTGTCCTGGATTTTCGCCTTCA-CGTT 7226686 Query 43113 G-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | | ||||| |||| ||||| || | |||||||| || || || || ||||| Sbjct 7226685 GTCGATGGTGTCTGAGCTC---TCCACCTCCAGGGTGATGGTCTTTCCGGTGAGGGTCTT 7226629 Query 43169 TACAAAGATTTGCATT 43184 || || || |||||| Sbjct 7226628 GACGAAAATCTGCATT 7226613 >seq255 Length=3424836 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| || | | | |||||| || | ||||||||||| || |||||||| ||||| Sbjct 2252969 TCCTCCCCTCAGCCTGAGCACCAAGTGGAGCGTGCTCTCCTTCTGGATATTGTAGTCAGC 2253028 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || ||| | || || |||||||| || || || || || | |||||| || | || Sbjct 2253029 GAGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCAAAGATAAGCCTCTGCTGATCCGGGGG 2253088 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | |||||||||| ||||||| ||| | | | | |||||| ||| || Sbjct 2253089 GATTCCCTCCTTGTCCTGGATTTTTGCTTTCACATTGTCGATGGTGTCGGAGCTTTCGAC 2253148 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||||||||| || || || ||||| ||||| || ||||| Sbjct 2253149 CTCCAAAGTGATGGTTTTCCCGGTGAGGGTCTTCACAAAAATCTGCAT 2253196 >seq482 Length=739299 Score = 111 bits (122), Expect = 2e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||| ||||| ||| ||||| ||||||||||||||||| ||||| || | || || Sbjct 127944 ACCAGATGCAGTGTAGATTCCTTCTGAATATTGTAATCAGCAAGAGTACGTCCATCTTCA 128003 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| || ||||| || | |||||||| || | || | | ||||||||| || Sbjct 128004 AGCTGCTTCCCGGCGAAGATTAACCGCTGCTGATCCGGAGGGATCCCTTCCTTGTCC-TG 128062 Query 43095 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 | | || | |||| | | | ||||| || ||||| || | ||| || || || Sbjct 128063 AATCTTGGCCTTGACATTGTCAATGGTGTCCGAGGACTCCACCTCCAGCGTAATCGTCTT 128122 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACGCCG 43193 ||||| || ||||| |||||||| ||||| || ||| || Sbjct 128123 ACCCGTGAGGGTCTTCACAAAGATCTGCATCTTCACGGCG 128162 >seq3 Length=5347415 Score = 107 bits (118), Expect = 2e-18 Identities = 154/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | ||||||||||| || || ||||| ||||||| || ||| |||| || Sbjct 3172382 ACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGCCAATGTGCGCCCGTCCTCC 3172441 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| || || || || | | ||||||||| | || | || ||||| ||| || Sbjct 3172442 AGCTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGGATGCCTTCCTTATCC-TG 3172500 Query 43095 ATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 43150 | |||| | | ||| | | | ||||| |||| || || |||| || ||||| Sbjct 3172501 AATTTTAGCCTTCACGTTGTCGATGGTGTCCGAGCTC---TCTACTTCGAGGGTAATGGT 3172557 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| ||||| ||||| |||||||| ||||| Sbjct 3172558 CTTGCCAGTTAGAGTCTTGACAAAGATCTGCAT 3172590 Score = 102 bits (112), Expect = 9e-17 Identities = 143/197 (73%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||||||||||| ||||| | || || |||||||| || ||||| Sbjct 3172171 CTCCTTCTGGATGTTGTAATCAGCCAAAGTCCTGCCATCTTCCAGCTGCTTCCCGGCGAA 3172230 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| | ||||||||| | || | | ||| |||||| ||| | |||| | ||| Sbjct 3172231 GATGAGCCTCTGCTGGTCCGGGGGGATCCCCTCTTTGTCC-TGAATCTTTGCCTTCACGT 3172289 Query 43112 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| |||| ||||| || | ||||| ||||| || || || |||| Sbjct 3172290 TGTCTATGGTGTCCGAGCTC---TCCACCTCCAAGGTGATTGTTTTCCCAGTGAGAGTCT 3172346 Query 43168 TTACAAAGATTTGCATT 43184 | || ||||| |||||| Sbjct 3172347 TCACGAAGATCTGCATT 3172363 >seq415 Length=3446356 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| ||||| | || | || || || | |||||||||||||| || ||||| || || Sbjct 2240303 TCCACCTCTCAGGCGGAGGACTAAGTGGAGAGTGCTCTCCTTTTGGATGTTGTAGTCCGC 2240362 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || ||| |||| || |||||||| || || || || | | |||||| || | || Sbjct 2240363 CAAGGTGCGCCCGTCCTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCCGGGGG 2240422 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATT 43131 | | |||||| ||| ||| | || | || | | | | ||| || ||| || Sbjct 2240423 GATTCCCTCCTTATCC-TGAATCTTCGCCTTCACATTGTCGATCGTATCCGAGCT---TT 2240478 Query 43132 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || | ||||||||||| || || || ||||| |||||||| ||||| Sbjct 2240479 CGACCTCAAGGGTGATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 2240530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571813897481040