Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Utricularia_20gibba_20[genbank_20GCA_5F002189035.1_202017-06-12] 518 sequences; 100,688,548 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 4e-13 seq415 87.8 1e-12 seq3 87.8 1e-12 seq255 84.2 2e-11 >seq1 Length=8502017 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | ||| || | ||||| |||| ||||||||||| || | |||||||| | | Sbjct 7226612 CCACCCCTCAGCCTGAGGACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCTGCC 7226553 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| || | || || ||||| || ||||||| ||| ||||| | || Sbjct 7226552 AGGGTGCGCCCGTCCTCGAGCTGCTTCCCGGCGAAGATCAATCTCTGCTGATCTGGGGGG 7226493 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | || || || || ||| | | || || || | | ||||| ||| |||||| Sbjct 7226492 ATGCCCTCCTTATCCTGGATTTTCGCCTTCACGTTGTCGATGGTGTC-TGAGCTCTCGAC 7226434 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || ||||| ||||| || || |||||||| || ||||| Sbjct 7226433 CTCTAGAGTGATGGTTTTCCCGGTGAGGGTCTTCACAAAGATCTGCAT 7226386 >seq415 Length=3446356 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 || || |||| ||||||||||||||| | ||||| || | ||| || || |||| || Sbjct 2240322 ACTAAGTGGAGAGTGCTCTCCTTTTGGATGTTGTAGTCCGCCAAGGTGCGCCCGTCCTCA 2240381 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | || ||||||||||| ||||| | ||| ||||| | || | || || || || ||| Sbjct 2240382 AGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCCGGGGGGATTCCCTCCTTATC-CTG 2240440 Query 43021 -ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTT 43078 ||| | | || || || | | || || | ||| ||||| || | || || |||| Sbjct 2240441 AATCTTCGCCTTCACATTGTCGATCGTATC-CGAGCTTTCGACCTCAAGGGTGATGGTTT 2240499 Query 43079 TTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || || ||||| || ||||| || ||||| Sbjct 2240500 TCCCTGTGAGAGTCTTGACAAAGATCTGCAT 2240530 >seq3 Length=5347415 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | ||| |||| ||||| |||| |||||||||||| || | ||||| || | | Sbjct 3172364 CCACCTCTCAGCCTTAGGACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGCC 3172423 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||| || |||| |||| || || || ||||| ||||| | ||| || || | || Sbjct 3172424 AATGTGCGCCCGTCCTCCAGCTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGG 3172483 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | ||||| || || ||| || | || || || | | ||||| | ||| ||| | Sbjct 3172484 ATGCCTTCCTTATC-CTGAATTTTAGCCTTCACGTTGTCGATGGTGTC-CGAGCTCTCTA 3172541 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || || || || |||||||| || ||||| || ||||| Sbjct 3172542 CTTCGAGGGTAATGGTCTTGCCAGTTAGAGTCTTGACAAAGATCTGCAT 3172590 >seq255 Length=3424836 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | ||| || | |||||| |||| ||||||||||| || | |||||| || | Sbjct 2252970 CCTCCCCTCAGCCTGAGCACCAAGTGGAGCGTGCTCTCCTTCTGGATATTGTAGTCAGCG 2253029 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || |||| || || |||||||| || | | ||| ||||| | || Sbjct 2253030 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCAAAGATAAGCCTCTGCTGATCCGGGGGG 2253089 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | || || || || ||| |||| || || | | |||||| ||| ||||| Sbjct 2253090 ATTCCCTCCTTGTCCTGGATTTTTGCTTTCACATTGTCGATGGTGTCG-GAGCTTTCGAC 2253148 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| ||||| || || ||||||||||| ||||| Sbjct 2253149 CTCCAAAGTGATGGTTTTCCCGGTGAGGGTCTTCACAAAAATCTGCAT 2253196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381367192366044