Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Utricularia_20gibba_20[genbank_20GCA_5F002189035.1_202017-06-12] 518 sequences; 100,688,548 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq3 96.9 3e-15 seq255 93.3 4e-14 seq415 89.7 4e-13 >seq3 Length=5347415 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| |||| || ||||| |||| ||| | || |||||| || || ||||| || | Sbjct 3172362 TTCCACCTCTCAGCCTTAGGACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAG 3172421 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 ||| ||| ||||||||||||| || || ||| | || | |||||||| ||| | Sbjct 3172422 CCAATGTGCGCCCGTCCTCCAGCTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCCGGTG 3172481 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCC 18991 | | ||| || || || |||||| || || | | ||| || || | || ||| Sbjct 3172482 GGATGCCTTCCTTATCCTGAATTTTAGCCTTCACGTTGTCGATGGTGTC-CGAGCTCTCT 3172540 Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| ||||||||| || || |||| ||| |||||||| || ||||| Sbjct 3172541 ACTTCGAGGGTAATGGTCTTGCCAGTTAGAGTCTTGACAAAGATCTGCAT 3172590 >seq255 Length=3424836 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | || ||| | ||||| ||| | ||| |||||| || |||||||| || | Sbjct 2252968 TTCCTCCCCTCAGCCTGAGCACCAAGTGGAGCGTGCTCTCCTTCTGGATATTGTAGTCAG 2253027 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | || | ||||||||||| || || ||| | ||||| |||||||||||| || Sbjct 2253028 CGAGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCAAAGATAAGCCTCTGCTGATCCGGGG 2253087 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||| ||||| ||||| ||| || | | ||| || ||| || | || Sbjct 2253088 GGATTCCCTCCTTGTCCTGGATTTTTGCTTTCACATTGTCGATGGTGTCG-GAGCTTTCG 2253146 Query 18993 -TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || |||||||| || || | || || |||||||| ||||| Sbjct 2253147 ACCTCCAAAGTGATGGTTTTCCCGGTGAGGGTCTTCACAAAAATCTGCAT 2253196 >seq415 Length=3446356 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 18850 CTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATA 18909 ||||||||| || ||||| ||||||| || ||||||| ||||| || || ||| | Sbjct 2240339 CTCCTTTTGGATGTTGTAGTCCGCCAAGGTGCGCCCGTCCTCAAGCTGCTTGCCGGCAAA 2240398 Query 18910 AATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTG 18969 || | |||||||||||| ||| | ||||| || || ||| ||| || || | Sbjct 2240399 GATCAACCTCTGCTGATCCGGGGGGATTCCCTCCTTATCCTGAATCTTCGCCTTCACATT 2240458 Query 18970 GCCGACAGTATCGCCAGGCTCCG-TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGA 19028 | ||| ||||| | || | || || | ||| |||||||| ||||| | ||| |||| Sbjct 2240459 GTCGATCGTATC-CGAGCTTTCGACCTCAAGGGTGATGGTTTTCCCTGTGAGAGTCTTGA 2240517 Query 19029 CAAAAATTTGCAT 19041 |||| || ||||| Sbjct 2240518 CAAAGATCTGCAT 2240530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414570182750092