Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Utricularia_20gibba_20[genbank_20GCA_5F002189035.1_202017-06-12] 518 sequences; 100,688,548 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq255 104 2e-17 seq3 96.9 3e-15 seq415 89.7 4e-13 seq1 89.7 4e-13 >seq255 Length=3424836 Score = 104 bits (114), Expect = 2e-17 Identities = 165/236 (70%), Gaps = 18/236 (8%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||||| ||||||| || ||||||||||||||||| || ||||| || || Sbjct 2252970 CCTCCCCTCAGCCTGAGCACCAAGTGGAGCGTGCTCTCCTTCTGGATATTGTAGTCAGCG 2253029 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | ||| | || |||| ||||| |||||||| || || | |||||||||| || Sbjct 2253030 AGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCAAAGATAAGCCTCTGCTGATCCGGGGGG 2253089 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC---G 34077 | | ||| |||||| | ||||||||| ||||| | || | | || | Sbjct 2253090 ATTCCCTCCTTGTCC-TGGATTTTTGCTT--------TCACATTGTCGATGGTGTCGGAG 2253140 Query 34078 CATTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | ||||||| || || ||||| ||||| || || |||||||| || ||||| Sbjct 2253141 CTTTCGACCTCCAAAGTGATGGTTTTCCCGGTGAGGGTCTTCACAAAAATCTGCAT 2253196 >seq3 Length=5347415 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||||||||| || |||| || || |||||||||||||| |||||||| || ||| Sbjct 3172364 CCACCTCTCAGCCTTAGGACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGCC 3172423 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 ||| ||| |||| |||| ||||| || ||||| |||| | |||||| ||| || Sbjct 3172424 AATGTGCGCCCGTCCTCCAGCTGCTTTCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGG 3172483 Query 34021 ACGCTCTCTTTGTCCATAATTTT 34043 | || || || ||| |||||| Sbjct 3172484 ATGCCTTCCTTATCCTGAATTTT 3172506 >seq415 Length=3446356 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||||||| || || || | || || ||||||||||| || |||||||| || ||| Sbjct 2240304 CCACCTCTCAGGCGGAGGACTAAGTGGAGAGTGCTCTCCTTTTGGATGTTGTAGTCCGCC 2240363 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 || ||| |||| || | |||||||||||||| |||| | |||||||||| Sbjct 2240364 AAGGTGCGCCCGTCCTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCC 2240417 >seq1 Length=8502017 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || ||||||| || |||| || || |||||||||||||| ||||||||||||||| Sbjct 7226612 CCACCCCTCAGCCTGAGGACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCTGCC 7226553 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | ||| |||| || | ||||| ||||| || |||| | ||||||||| || Sbjct 7226552 AGGGTGCGCCCGTCCTCGAGCTGCTTCCCGGCGAAGATCAATCTCTGCTGATCTGGGGGG 7226493 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGCA 34079 | || ||| || ||| ||||| ||| | | | | || | || | ||| Sbjct 7226492 ATGCCCTCCTTATCCTGGATTTTCGCCTTCACGTTGTCGATGGTGTCTG-AGCTCTCGAC 7226434 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || || ||||| ||||| || || ||||||||||| ||||| Sbjct 7226433 CTCTAGAGTGATGGTTTTCCCGGTGAGGGTCTTCACAAAGATCTGCAT 7226386 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || |||| || ||| || || || || ||||||||||||||||||||| ||| Sbjct 6606786 CCTCCCCTGAGCCTCAACACAAGGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCGGCC 6606845 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | | | || ||||| |||||||| |||||||||| | ||||||||| Sbjct 6606846 AGCGTCCTCCCATCTTCCAACTGCTTGCCAGCAAATATCAACCTCTGCTGATC 6606898 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || ||||||| || |||| || || |||||||||||||| |||||||| || || Sbjct 7226385 ACCACCCCTCAGCCTGAGGACCAAGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGC 7226326 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || |||| || | ||||| |||||||| || || |||||||| || || Sbjct 7226325 GAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGCCGCTGCTGGTCTGGGGG 7226266 Query 34020 CACGCTCTCTTTGTC 34034 | || ||||||||| Sbjct 7226265 GATGCCCTCTTTGTC 7226251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397059893295436