Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Utricularia_20gibba_20[genbank_20GCA_5F002189035.1_202017-06-12] 518 sequences; 100,688,548 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq304 95.1 8e-15 seq3 95.1 8e-15 seq255 93.3 3e-14 seq482 86.0 4e-12 >seq304 Length=3547449 Score = 95.1 bits (104), Expect = 8e-15 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 39491 CGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGG 39550 |||| || || | || || |||| |||| ||| ||| || || || ||||| |||| Sbjct 3199037 CGCCACCGCGTAGGCGGAGGACCAGGTGCAGTGTGGATTCCTTCTGGATGTTATAGTCGG 3199096 Query 39551 CCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 | | | |||| |||| || | || || ||| | || || || ||||||||||||| | Sbjct 3199097 CGAGAGTGCGTCCATCTTCGAGCTGCTTTCCGGCGAAGATCAACCGCTGCTGATCCGGAG 3199156 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGCTTT 39667 | | ||||| || || | | | || | || | || |||| | ||||| | | || Sbjct 3199157 GAATCCCTTCCTTATC-CTGAATCTTGGCCTTCACATTGTCG--ATGGTGTCGGAGGATT 3199213 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| |||| |||||| || || ||||| | ||||| |||||||||||||| Sbjct 3199214 CCACCTCCAGAGTAATCGTCTTCCCCGTAAGGGTTTTCACGAAGATCTGCAT 3199265 >seq3 Length=5347415 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || |||| ||| || || | || | ||| || || || || || ||||| || Sbjct 3172135 GCCCCCACGCAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGC 3172194 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 |||| | |||| |||| || |||||| | || || | | |||||| |||| ||| Sbjct 3172195 CAAAGTCCTGCCATCTTCCAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGG 3172254 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCA 39670 | || |||||||| || ||| || | ||| | ||| ||||| | ||| |||| Sbjct 3172255 GATCCCCTCTTTGTCCTGAATCTTTGCCTTCA-CGTTGTCTATGGTGTCCGAGCTCTCCA 3172313 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||||| || |||||||| || || | ||| || |||||||||||||| Sbjct 3172314 CCTCCAAGGTGATTGTTTTCCCAGTGAGAGTCTTCACGAAGATCTGCAT 3172362 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 || || ||||| ||||| || |||||| || || || || ||||| | || || Sbjct 3172832 CGGAGGACCAAGTGCAAGGTCGATTCTTTCTGGATGTTGTAGTCGGCAAGGGTACGACCA 3172891 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || || | ||| || ||| ||||||| | | |||||||||| ||| | ||||| ||| Sbjct 3172892 TCCTCGAGTTGCTTGCCGGCAAAAATCAGCCTTTGCTGATCCGGGGGAATTCCTTCCTTG 3172951 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || || || ||||| | | | ||||| | |||||||| || | || ||| Sbjct 3172952 TCCTGGATCTTGGCTTTAACATTGTCAATGGTGTCGGAACTTTCCACCTCGAGGGTGATT 3173011 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || | ||||| |||||||||||||| Sbjct 3173012 GTTTTTCCTGTGAGGGTTTTCACGAAGATCTGCAT 3173046 >seq255 Length=3424836 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || ||||| || | ||||| || || || ||||| || || || | ||| |||| Sbjct 2252985 AGCACCAAGTGGAGCGTGCTCTCCTTCTGGATATTGTAGTCAGCGAGGGTGCGCCCATCC 2253044 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 |||| || |||||| |||| || | | ||||||||||| ||| | || || ||||| Sbjct 2253045 TCCAGCTGCTTCCCGGCAAAGATAAGCCTCTGCTGATCCGGGGGGATTCCCTCCTTGTCC 2253104 Query 39628 CATATTTTTTGTTT--AATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTG 39685 |||||| ||| || |||| | ||||| | |||||| || |||||||| || | Sbjct 2253105 TGGATTTTTGCTTTCACATTGTCG--ATGGTGTCGGAGCTTTCGACCTCCAAAGTGATGG 2253162 Query 39686 TTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| || || | || || || || |||||||| Sbjct 2253163 TTTTCCCGGTGAGGGTCTTCACAAAAATCTGCAT 2253196 >seq482 Length=739299 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 39491 CGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGG 39550 |||| || || | || || |||| ||||| || ||| || || ||||| ||||| | Sbjct 127924 CGCCACCCCGAAGGCGGAGGACCAGATGCAGTGTAGATTCCTTCTGAATATTGTAATCAG 127983 Query 39551 CCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 | | | ||| |||| || | || |||||| | || ||||| ||||||||||||| | Sbjct 127984 CAAGAGTACGTCCATCTTCAAGCTGCTTCCCGGCGAAGATTAACCGCTGCTGATCCGGAG 128043 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGCTTT 39667 | | ||||| ||||| | | | || | || | || || | | ||||| | | | Sbjct 128044 GGATCCCTTCCTTGTC-CTGAATCTTGGCCTTGACATTGT--CAATGGTGTCCGAGGACT 128100 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| |||| ||||| || |||||||| | || || || ||||||||||| Sbjct 128101 CCACCTCCAGCGTAATCGTCTTACCCGTGAGGGTCTTCACAAAGATCTGCAT 128152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347367407012294