Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq197427 107 4e-18 seq196962 100 6e-16 seq199587 98.7 2e-15 seq196792 98.7 2e-15 seq196250 98.7 2e-15 seq192461 98.7 2e-15 seq177521 98.7 2e-15 seq162838 98.7 2e-15 seq162636 98.7 2e-15 seq120915 98.7 2e-15 >seq197427 Length=19924 Score = 107 bits (118), Expect = 4e-18 Identities = 566/895 (63%), Gaps = 14/895 (2%) Strand=Plus/Minus Query 229753 TCTGC--GTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAA 229810 ||||| ||| |||||| | || || | || ||||| ||||||||||| || | || Sbjct 14543 TCTGCATGTTTCCAATCAAGTACCCACAAATCTGGGAAATGTACAAGAAAGCAGAAGCCT 14484 Query 229811 CTTTCTGGACCACTGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGTGAGAAAC 229870 | |||||||| |||| ||||| ||| | | ||| || | ||||| || | | Sbjct 14483 CCTTCTGGACGGCTGAAGAAGTCGATCTCTCCTCCGACCTCCGCCACTGGGAGGAAACCC 14424 Query 229871 TCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATG 229930 | | |||||||| || || ||||||| ||| |||| | || ||||| | ||| || | Sbjct 14423 TGACCGACGACGAGCGACACTTCATCACCCACGTCCTCGCCTTCTTCGCCGCCTCTGACG 14364 Query 229931 GTATTGTGATGGAAAATCTGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCAC 229990 |||| || |||| || ||| || || | ||| || ||| | ||||| Sbjct 14363 GTATCGTCTTGGAGAACCTGGCCGGCAGGTTCATGAAGGAGGTCCAGGTAGCTGAGGCCA 14304 Query 229991 GGCAATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTGC 230050 | ||||| | | ||||| || ||| ||||| || ||| || || Sbjct 14303 GAGCCTTTTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACAGCCTCT 14244 Query 230051 TTATCGACGCGCTTATTTCCGA--CGAGCAAGAACGGAACGAGCTTTTTGATGCCATTGA 230108 | |||| || || || | | | |||| ||| || |||||| | || || || Sbjct 14243 TGCTCGAGTCGTACATCAAGGATTCTAACGAGAA-GGACCG-GCTTTTCCACGCGATCGA 14186 Query 230109 AAACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTGGTAA 230168 | ||||| || | || ||||| |||||||| | || ||| | || ||| | Sbjct 14185 GACGATCCCTTGCGTGGAAAAGAAGGCCAAGTGGGCCCTCAAGTGGATCGACGGTGGCGA 14126 Query 230169 ATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAG 230228 || || |||||||| |||| |||| | || || ||||| ||| | || |||||||| Sbjct 14125 GTCTTTCGCCGAGCGAATCGTTGCCTTTGCTTGCGTCGAAGGGATTTTCTTCTCCGGGAG 14066 Query 230229 TTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAA 230288 |||||||| ||||| ||||| || || |||||||||| | | || || Sbjct 14065 CTTCTGCGCGATCTTCTGGCTCAAAAAGCGCGGGTTGATGCCTGGGTTGACCTTCTCCAA 14006 Query 230289 CGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTT-ATGTATTCAA 230347 |||||| ||| | ||||| || | || | | || || |||| |||| Sbjct 14005 CGAGTTGATCTCAAGAGACGAAGGCTTGCA-CTGCGATTTTGCCTGCTTGCTGTA---CG 13950 Query 230348 AGCTCCAGA---ACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTG 230404 || | | || | ||||| ||| |||| ||| | | || || || | Sbjct 13949 AGTTGCTGACTCAGAAGCTGAGCGAGGAGCGAGTCAGGGGAATTGTGGCCGATGCGGTGG 13890 Query 230405 AAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTG 230464 | | ||| | |||||| | || ||||| | || ||| || | |||||||| | | Sbjct 13889 AGATCGAGAGGGAGTTTGTCTGCGACGCGCTGCCGTGTGCTCTGGTGGGCATGAATGGCG 13830 Query 230465 AACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACG 230524 | | ||| | || || || |||||||| || || | | || | ||| | || || | Sbjct 13829 ATTTGATGAGCCAATATATTGAATTCGTCGCTGATAGGCTGTTGGGTGCTTTGGGGTATG 13770 Query 230525 AGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGA 230584 ||| ||||| | | ||||| || |||| | |||||||| || | || |||| Sbjct 13769 GAAAAATGTACGATGCGAAGAATCCGTTTGATTGGATGGAGCTGATCAGTTTGCAGGGGA 13710 Query 230585 AGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGAA 230639 |||| ||||| ||||| ||| | || | || || |||| | || |||||||| Sbjct 13709 AGACAAACTTTTTCGAGAAGAGGGTTGGAGAGTACCAGAAGGCTTCGGTGATGAA 13655 >seq196962 Length=15922 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 12395 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 12336 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 12335 CCCCACGGTGGGC 12323 >seq199587 Length=4651 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 329 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 270 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 269 CCCACGGTGGGC 258 >seq196792 Length=15161 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 2044 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1985 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1984 CCCACGGTGGGC 1973 >seq196250 Length=13534 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 6450 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6509 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 6510 CCCACGGTGGGC 6521 >seq192461 Length=9305 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 6433 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6374 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 6373 CCCACGGTGGGC 6362 >seq177521 Length=5161 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 4866 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4925 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4926 CCCACGGTGGGC 4937 >seq162838 Length=3557 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1011 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1070 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1071 CCCACGGTGGGC 1082 >seq162636 Length=3542 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 800 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 741 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 740 CCCACGGTGGGC 729 >seq120915 Length=1542 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 931 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 872 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 871 CCCACGGTGGGC 860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1055110574665890