Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq197427 107 4e-18
seq196962 100 6e-16
seq199587 98.7 2e-15
seq196792 98.7 2e-15
seq196250 98.7 2e-15
seq192461 98.7 2e-15
seq177521 98.7 2e-15
seq162838 98.7 2e-15
seq162636 98.7 2e-15
seq120915 98.7 2e-15
>seq197427
Length=19924
Score = 107 bits (118), Expect = 4e-18
Identities = 566/895 (63%), Gaps = 14/895 (2%)
Strand=Plus/Minus
Query 229753 TCTGC--GTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAA 229810
||||| ||| |||||| | || || | || ||||| ||||||||||| || | ||
Sbjct 14543 TCTGCATGTTTCCAATCAAGTACCCACAAATCTGGGAAATGTACAAGAAAGCAGAAGCCT 14484
Query 229811 CTTTCTGGACCACTGAGGAAGTTCCTCTGAACGCAGACGTCGTCGACTGGCGTGAGAAAC 229870
| |||||||| |||| ||||| ||| | | ||| || | ||||| || | |
Sbjct 14483 CCTTCTGGACGGCTGAAGAAGTCGATCTCTCCTCCGACCTCCGCCACTGGGAGGAAACCC 14424
Query 229871 TCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATG 229930
| | |||||||| || || ||||||| ||| |||| | || ||||| | ||| || |
Sbjct 14423 TGACCGACGACGAGCGACACTTCATCACCCACGTCCTCGCCTTCTTCGCCGCCTCTGACG 14364
Query 229931 GTATTGTGATGGAAAATCTGCAGACCAACTTTAGTGTGGAAGTAACGGTTCCAGAGGCAC 229990
|||| || |||| || ||| || || | ||| || ||| | |||||
Sbjct 14363 GTATCGTCTTGGAGAACCTGGCCGGCAGGTTCATGAAGGAGGTCCAGGTAGCTGAGGCCA 14304
Query 229991 GGCAATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTGC 230050
| ||||| | | ||||| || ||| ||||| || ||| || ||
Sbjct 14303 GAGCCTTTTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACAGCCTCT 14244
Query 230051 TTATCGACGCGCTTATTTCCGA--CGAGCAAGAACGGAACGAGCTTTTTGATGCCATTGA 230108
| |||| || || || | | | |||| ||| || |||||| | || || ||
Sbjct 14243 TGCTCGAGTCGTACATCAAGGATTCTAACGAGAA-GGACCG-GCTTTTCCACGCGATCGA 14186
Query 230109 AAACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTGGTAA 230168
| ||||| || | || ||||| |||||||| | || ||| | || ||| |
Sbjct 14185 GACGATCCCTTGCGTGGAAAAGAAGGCCAAGTGGGCCCTCAAGTGGATCGACGGTGGCGA 14126
Query 230169 ATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAG 230228
|| || |||||||| |||| |||| | || || ||||| ||| | || ||||||||
Sbjct 14125 GTCTTTCGCCGAGCGAATCGTTGCCTTTGCTTGCGTCGAAGGGATTTTCTTCTCCGGGAG 14066
Query 230229 TTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAA 230288
|||||||| ||||| ||||| || || |||||||||| | | || ||
Sbjct 14065 CTTCTGCGCGATCTTCTGGCTCAAAAAGCGCGGGTTGATGCCTGGGTTGACCTTCTCCAA 14006
Query 230289 CGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTT-ATGTATTCAA 230347
|||||| ||| | ||||| || | || | | || || |||| ||||
Sbjct 14005 CGAGTTGATCTCAAGAGACGAAGGCTTGCA-CTGCGATTTTGCCTGCTTGCTGTA---CG 13950
Query 230348 AGCTCCAGA---ACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTG 230404
|| | | || | ||||| ||| |||| ||| | | || || || |
Sbjct 13949 AGTTGCTGACTCAGAAGCTGAGCGAGGAGCGAGTCAGGGGAATTGTGGCCGATGCGGTGG 13890
Query 230405 AAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTG 230464
| | ||| | |||||| | || ||||| | || ||| || | |||||||| | |
Sbjct 13889 AGATCGAGAGGGAGTTTGTCTGCGACGCGCTGCCGTGTGCTCTGGTGGGCATGAATGGCG 13830
Query 230465 AACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACG 230524
| | ||| | || || || |||||||| || || | | || | ||| | || || |
Sbjct 13829 ATTTGATGAGCCAATATATTGAATTCGTCGCTGATAGGCTGTTGGGTGCTTTGGGGTATG 13770
Query 230525 AGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGA 230584
||| ||||| | | ||||| || |||| | |||||||| || | || ||||
Sbjct 13769 GAAAAATGTACGATGCGAAGAATCCGTTTGATTGGATGGAGCTGATCAGTTTGCAGGGGA 13710
Query 230585 AGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGAA 230639
|||| ||||| ||||| ||| | || | || || |||| | || ||||||||
Sbjct 13709 AGACAAACTTTTTCGAGAAGAGGGTTGGAGAGTACCAGAAGGCTTCGGTGATGAA 13655
>seq196962
Length=15922
Score = 100 bits (110), Expect = 6e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
||||||||||||||||| |||||||||| || || |||| || |||||||||||||||||
Sbjct 12395 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 12336
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 12335 CCCCACGGTGGGC 12323
>seq199587
Length=4651
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 329 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 270
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 269 CCCACGGTGGGC 258
>seq196792
Length=15161
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 2044 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1985
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 1984 CCCACGGTGGGC 1973
>seq196250
Length=13534
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 6450 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6509
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 6510 CCCACGGTGGGC 6521
>seq192461
Length=9305
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 6433 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6374
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 6373 CCCACGGTGGGC 6362
>seq177521
Length=5161
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 4866 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4925
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 4926 CCCACGGTGGGC 4937
>seq162838
Length=3557
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 1011 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1070
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 1071 CCCACGGTGGGC 1082
>seq162636
Length=3542
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 800 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 741
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 740 CCCACGGTGGGC 729
>seq120915
Length=1542
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 931 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 872
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 871 CCCACGGTGGGC 860
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1055110574665890
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |