Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq197427 158 1e-33 >seq197427 Length=19924 Score = 158 bits (174), Expect = 1e-33 Identities = 437/660 (66%), Gaps = 9/660 (1%) Strand=Plus/Plus Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735 ||||| || | ||| | || ||||||||||| || || |||| | | || |||| Sbjct 13673 TGGTACTCTCCAACCCTCTTCTCGAAAAAGTTTGTCTTCCCCTGCAAACTGATCAGCTCC 13732 Query 16736 ATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAAT 16795 || ||||||| ||||| | || | ||||| ||||||| | | | | Sbjct 13733 ATCCAATCAAACGGATTCTTCGCATCGTACATTTTTCCATACCCCAAAGCACCCAACAGC 13792 Query 16796 CTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGT 16855 ||||| || || ||||| |||||||||| ||| || |||| ||||| || | ||| | Sbjct 13793 CTATCAGCGACGAATTCAATATATTGGCTCATCAAATCGCCATTCATGCCCACCAGA-GC 13851 Query 16856 AC-CGGAAGAGCTTCCGTCAAAAA-TCGTTGCTCTATAACAACCGCTTCCTTAATAATAC 16913 || ||| || || || | ||| || | ||| || | ||||| || | ||| | Sbjct 13852 ACACGGCAGCGCGTCGCAGACAAACTCCCT-CTCGATCTCCACCGCATCGGCCACAATTC 13910 Query 16914 TAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAAT 16973 ||||| |||||| | | | || | || | ||| || || || |||| Sbjct 13911 CCCTGACTCGCTCCTCGCTCAGCTTCTGAGTCAGCAACTCGTACAGCAAGCAGGCAAAAT 13970 Query 16974 CGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCT 17033 |||| || || || |||||||| ||| | ||||| || || |||||||| |||||| Sbjct 13971 CGCAGTGCAAGCCTTCGTCTCTTGAGATCAACTCGTTGGAGAAGGTCAACCCAGGCATCA 14030 Query 17034 TTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGA 17093 || || || || | ||| || |||||| ||| ||| || ||||| || || |||| Sbjct 14031 ACCCGCGCTTTTTGAGCCAGAAGATCGCGCAGAAGCTCCCGGAGAAGAAAATCCCTTCGA 14090 Query 17094 CGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCT 17153 || | ||||| || | | ||| |||||| | | | || | || ||| |||| || Sbjct 14091 CGCAAGCAAAGGCAACGATTCGCTCGGCGAAAGACTCGCCACCGT--CGA-TCCACTTGA 14147 Query 17154 GCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCT 17213 | |||||| ||| || | | | |||| ||||| || || || | || | | Sbjct 14148 GGGCCCACTTGGCCTTCTTTTCCACGCAAGGGATCGTCTCGATCGCGTGGAAAAGCCGGT 14207 Query 17214 CTTTTTCCTGTAGG-TCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGT 17272 | || || | ||| || | || |||| |||| | |||||||||||||||||||| Sbjct 14208 CCTTCTCGT-TAGAATCCTTGATGTACGACTCGAGCAAGAGGCTGTACATTTCGGAGTGG 14266 Query 17273 ATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC 17332 |||||||| ||||| || || || ||||||||| || ||| || |||| || || ||| Sbjct 14267 ATGTTCTCGATGGCGATTTGGAAGCCGTAAAAGGCTCTGGCCTCAGCTACCTGGACCTCC 14326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516250422728040