Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq197427 145 9e-30
seq181835 87.8 2e-12
seq190796 86.0 7e-12
>seq197427
Length=19924
Score = 145 bits (160), Expect = 9e-30
Identities = 249/359 (69%), Gaps = 2/359 (1%)
Strand=Plus/Plus
Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186
||| ||| || || ||||||||||| | || |||||||| || || |||||||| |
Sbjct 13953 ACAGCAAGCAGGCAAAATCGCAGTGCAAGCCTTCGTCTCTTGAGATCAACTCGTTGGAGA 14012
Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 24246
| || | || ||||| | || |||||||| ||||| || || | |||| | | ||| |
Sbjct 14013 AGGTCAACCCAGGCATCAACCCGCGCTTTTTGAGCCAGAAGATCG-CGCAGAAGCTCCCG 14071
Query 24247 AA-AAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTG 24305
| |||||||| ||||| || |||||||||| | || || | || |||
Sbjct 14072 GAGAAGAAAATCCCTTCGACGCAAGCAAAGGCAACGATTCGCTCGGCGAAAGACTCGCCA 14131
Query 24306 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 24365
| | |||||||| | ||||| | ||||||||||| || ||||| || ||||| ||
Sbjct 14132 CCGTCGATCCACTTGAGGGCCCACTTGGCCTTCTTTTCCACGCAAGGGATCGTCTCGATC 14191
Query 24366 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 24425
|| | || || || || || ||| ||| || | || | || | ||| || ||
Sbjct 14192 GCGTGGAAAAGCCGGTCCTTCTCGTTAGAATCCTTGATGTACGACTCGAGCAAGAGGCTG 14251
Query 24426 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC 24484
|||||||| || || ||||| || ||||| ||||| || ||||| || ||| |||||
Sbjct 14252 TACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAAAAGGCTCTGGCCTC 14310
>seq181835
Length=5898
Score = 87.8 bits (96), Expect = 2e-12
Identities = 140/201 (70%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 54206 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCG 54265
|| |||| |||| |||| | | ||| |||| |||||||||||||| ||||| || ||
Sbjct 3444 GCAGTGTCATTAAAAACACGTAGCATGGGAACAATACCATTGGATGTCCCATTTGTTCCA 3385
Query 54266 GAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATT 54325
||||||||| || | ||||| |||||| || || | ||| || || || ||
Sbjct 3384 CGGATATAGCTGCCTGTAGCACGTATATTATGAACAGAGACACCAATTCCTCCCGCTGAC 3325
Query 54326 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 54385
|| |||| ||| || || || || ||||| || || || ||||||||||| ||
Sbjct 3324 TTGCTGATTGTTGCACACTCCTTCAAAGTTTCATATATTCCTTCAATACTATCATCTTTC 3265
Query 54386 ATGTTAAGTAGAAAACAGCTA 54406
||| | | ||| ||||||
Sbjct 3264 ATGCACACCAAAAAGCAGCTA 3244
Score = 86.0 bits (94), Expect = 7e-12
Identities = 122/169 (72%), Gaps = 2/169 (1%)
Strand=Plus/Minus
Query 53926 TCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGG 53985
|||||| ||| | | || | | |||||| || || |||||| || | || || ||
Sbjct 4032 TCTTTCATATTGGGCGTAAAGTTTTTCAAAATCTTCACCCCAACAATCAGCTAAGCCTGG 3973
Query 53986 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGA 54044
| |||| ||||| | ||| ||||| || | | | |||||| ||| ||||||||| |
Sbjct 3972 AGCCTCATTTGGACAAAACAAAGACCATTCCCTATTA-CCTTCAACTCTTTTCATAAAAA 3914
Query 54045 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTC 54093
||||||| ||||||||||| ||||||||| |||| | ||| || ||
Sbjct 3913 GATCAGGTATCCAAAGAGCATAAAATAGATCCCTGGCCCGATGCTCTTC 3865
>seq190796
Length=8466
Score = 86.0 bits (94), Expect = 7e-12
Identities = 77/97 (79%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194
|| || || |||||||| ||||||||||||||| ||| | ||| || || || || |
Sbjct 3084 CAAGCAAAGTCGCAGTGCAGACCCTCGTCTCTAGAAATAAGTTCATTTGAGAATGTCAAG 3143
Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG 24231
|| ||||| || || | ||||||||||||||||||||
Sbjct 3144 CCTGGCATCAGTCCCCTCTTTTTAAGCCAAAATATGG 3180
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592235789431440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |