Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq197427 145 9e-30 seq181835 87.8 2e-12 seq190796 86.0 7e-12 >seq197427 Length=19924 Score = 145 bits (160), Expect = 9e-30 Identities = 249/359 (69%), Gaps = 2/359 (1%) Strand=Plus/Plus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 ||| ||| || || ||||||||||| | || |||||||| || || |||||||| | Sbjct 13953 ACAGCAAGCAGGCAAAATCGCAGTGCAAGCCTTCGTCTCTTGAGATCAACTCGTTGGAGA 14012 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 24246 | || | || ||||| | || |||||||| ||||| || || | |||| | | ||| | Sbjct 14013 AGGTCAACCCAGGCATCAACCCGCGCTTTTTGAGCCAGAAGATCG-CGCAGAAGCTCCCG 14071 Query 24247 AA-AAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTG 24305 | |||||||| ||||| || |||||||||| | || || | || ||| Sbjct 14072 GAGAAGAAAATCCCTTCGACGCAAGCAAAGGCAACGATTCGCTCGGCGAAAGACTCGCCA 14131 Query 24306 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 24365 | | |||||||| | ||||| | ||||||||||| || ||||| || ||||| || Sbjct 14132 CCGTCGATCCACTTGAGGGCCCACTTGGCCTTCTTTTCCACGCAAGGGATCGTCTCGATC 14191 Query 24366 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 24425 || | || || || || || ||| ||| || | || | || | ||| || || Sbjct 14192 GCGTGGAAAAGCCGGTCCTTCTCGTTAGAATCCTTGATGTACGACTCGAGCAAGAGGCTG 14251 Query 24426 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC 24484 |||||||| || || ||||| || ||||| ||||| || ||||| || ||| ||||| Sbjct 14252 TACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAAAAGGCTCTGGCCTC 14310 >seq181835 Length=5898 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 54206 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCG 54265 || |||| |||| |||| | | ||| |||| |||||||||||||| ||||| || || Sbjct 3444 GCAGTGTCATTAAAAACACGTAGCATGGGAACAATACCATTGGATGTCCCATTTGTTCCA 3385 Query 54266 GAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATT 54325 ||||||||| || | ||||| |||||| || || | ||| || || || || Sbjct 3384 CGGATATAGCTGCCTGTAGCACGTATATTATGAACAGAGACACCAATTCCTCCCGCTGAC 3325 Query 54326 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 54385 || |||| ||| || || || || ||||| || || || ||||||||||| || Sbjct 3324 TTGCTGATTGTTGCACACTCCTTCAAAGTTTCATATATTCCTTCAATACTATCATCTTTC 3265 Query 54386 ATGTTAAGTAGAAAACAGCTA 54406 ||| | | ||| |||||| Sbjct 3264 ATGCACACCAAAAAGCAGCTA 3244 Score = 86.0 bits (94), Expect = 7e-12 Identities = 122/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 53926 TCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGG 53985 |||||| ||| | | || | | |||||| || || |||||| || | || || || Sbjct 4032 TCTTTCATATTGGGCGTAAAGTTTTTCAAAATCTTCACCCCAACAATCAGCTAAGCCTGG 3973 Query 53986 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGA 54044 | |||| ||||| | ||| ||||| || | | | |||||| ||| ||||||||| | Sbjct 3972 AGCCTCATTTGGACAAAACAAAGACCATTCCCTATTA-CCTTCAACTCTTTTCATAAAAA 3914 Query 54045 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTC 54093 ||||||| ||||||||||| ||||||||| |||| | ||| || || Sbjct 3913 GATCAGGTATCCAAAGAGCATAAAATAGATCCCTGGCCCGATGCTCTTC 3865 >seq190796 Length=8466 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || || |||||||| ||||||||||||||| ||| | ||| || || || || | Sbjct 3084 CAAGCAAAGTCGCAGTGCAGACCCTCGTCTCTAGAAATAAGTTCATTTGAGAATGTCAAG 3143 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG 24231 || ||||| || || | |||||||||||||||||||| Sbjct 3144 CCTGGCATCAGTCCCCTCTTTTTAAGCCAAAATATGG 3180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592235789431440