Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq194317 86.0 5e-12 seq181690 86.0 5e-12 seq194543 84.2 2e-11 >seq194317 Length=10706 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 || ||||| || ||| ||||||| || || || |||||||| ||| || ||| || Sbjct 1535 AAGATGCAGATCTTCGTCAAAACCTTAACCGGGAAAACCATAACCCTAGAGGTTGAATCC 1476 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || || | | | || | || ||| || || |||||||| | || ||| Sbjct 1475 TCTGACACCATCGACAATGTCAAAGCAAAGATCCAGGACAAAGAAGGCATACCACCAGAC 1416 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 ||||| | |||||||| || ||||| || ||||| || | |||| | ||||| ||| Sbjct 1415 CAACAGCGCCTTATCTTCGCCGGCAAGCAGCTGGAGGACGGAAGAACTCTAGCCGACTAC 1356 Query 29139 AATATTCAGAAGGAATCTACTCTTCAC 29165 || || ||||||||||| || || ||| Sbjct 1355 AACATCCAGAAGGAATCCACGCTCCAC 1329 >seq181690 Length=5866 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||||||||| | ||||| | || || || ||||| ||| ||| ||| | Sbjct 3189 ATGCAAATATTTGTGAAAACCCTCACAGGGAAGACCATAACCCTTGAAGTGGAGAGTTCG 3130 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||||| ||| ||| ||||| || || | || ||| || Sbjct 3129 GATACCATTGACAACGTTAAGGCAAAGATTCAAGATAAGGAGGGGATCCCACCAGACCAG 3070 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| ||||||||||| || ||||| || ||||| || | || ||||||||| Sbjct 3069 CAAAGGCTTATCTTTGCTGGAAAACAGCTTGAAGACGGACGCACCCTTGCGGATTACAAT 3010 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| |||||||| || |||||| |||| | || ||| | || || Sbjct 3009 ATTCAAAAGGAATCGACCCTTCACTTGGTTCTGCGTTTAAGGGGCGG 2963 >seq194543 Length=10949 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| ||||||| |||| ||||| || || || ||| ||| | | Sbjct 3254 ATGCAGATCTTCGTCAAAACCCTGACTGGCAAGACGATCACGCTCGAGGTCGAAAGCTCC 3313 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | | ||| ||||| || || |||||| | || |||||| Sbjct 3314 GACACTATCGACAACGTCAAGGCGAAAATCCAGGACAAGGAAGGTATCCCTCCAGATCAG 3373 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || || ||||| || || || |||||||||||| ||| | |||||||| || Sbjct 3374 CAGAGGCTAATCTTCGCTGGAAAGCAACTGGAAGATGGGCGGACTTTAGCCGATTATAAC 3433 Query 29142 ATTCAGAAGGAATCTACTCTTCAC 29165 || ||||||||||| ||||||||| Sbjct 3434 ATCCAGAAGGAATCCACTCTTCAC 3457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427290871269965