Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq181690 89.7 4e-13 >seq181690 Length=5866 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || | ||||| | || || || ||||| ||| || |||| | | Sbjct 3645 ATGCAGATCTTTGTGAAAACCCTCACCGGTAAGACCATCACCCTTGAGGTGGAAAGCTCT 3586 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || ||||| ||| || ||||| ||||| | ||| ||| || Sbjct 3585 GATACAATTGATAATGTCAAGGCAAAGATCCAAGATAAGGAAGGGATTCCCCCAGACCAG 3526 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||| ||||||||||| || ||||| ||||| ||| | || | || ||||||||| Sbjct 3525 CAAAGGCTTATCTTTGCAGGGAAACAGTTGGAGGATGGGAGGACCCTAGCTGATTACAAT 3466 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGT 25243 || |||||||| || || |||||| |||| Sbjct 3465 ATCCAAAAGGAGTCAACCCTTCACTTGGT 3437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409794466463042