Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq176217 131 3e-25 seq181690 122 1e-22 seq194543 102 1e-16 seq160375 96.9 5e-15 >seq176217 Length=4970 Score = 131 bits (144), Expect = 3e-25 Identities = 178/247 (72%), Gaps = 1/247 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||||||||| | ||||| || ||||| ||||| || ||| ||||| | ||| | Sbjct 2746 ATGCAAATATTCGTGAAGACCCTGACAGGAAAAACCATCACTTTAGAGGTCGAAAGCTCT 2687 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| | ||| || || || || || ||||| || || || || || Sbjct 2686 GACACAATTGATAACGTCAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 2627 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||||||||||||||| || || ||| | ||||| | || || | | ||||| ||| Sbjct 2626 CAAAGGCTTATTTTTGCCGGCAAGCAACTCGAGGACGGCCGTACCCTTGCCGATTACAAT 2567 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTC 124777 || ||||| ||||| || | |||||||| | ||| | ||||||| || ||| |||| Sbjct 2566 ATCCAAAAGGAATCCACCCTCCATTTGGTGCTCCGTCTCAGAGGTGGCATGCAAATATTC 2507 Query 124778 ATAAAAA 124784 | |||| Sbjct 2506 GTGAAAA 2500 Score = 96.9 bits (106), Expect = 5e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||||||||| | || || || || || || || || ||| | ||| | ||| Sbjct 2518 ATGCAAATATTCGTGAAAACTCTCACCGGGAAGACCATCACTTTGGAGGTGGAAAGTTCC 2459 Query 124599 GATACAATTTCTAA-TTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| |||| || || || |||||||| ||||| || || || || || Sbjct 2458 GATACAATTGATAACGTTAAGGCA-AAGATCCAAGATAAGGAAGGGATTCCCCCGGACCA 2400 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || ||||| || |||||| | |||||| | | || ||| ||||| || Sbjct 2399 GCAGAGGCTGATCTTTGCTGGGAAACAACTGGAGGATGGGAGGACCCTAGCGGATTACAA 2340 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747 || ||||| || || || |||| ||||| Sbjct 2339 CATCCAAAAGGAGTCGACCCTGCACTTGGT 2310 Score = 93.3 bits (102), Expect = 6e-14 Identities = 169/245 (69%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 124535 TACA-ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAG 124593 |||| ||||| || || | || || || ||||| ||||| || ||| | ||| | ||| Sbjct 2979 TACAGATGCAGATCTTCGTGAAAACCCTGACAGGAAAAACCATCACTTTGGAGGTCGAAA 2920 Query 124594 CAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTG 124653 ||| || ||| ||| | ||| || || || || || ||||| || || || | Sbjct 2919 GCTCTGACACTATTGATAACGTCAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAG 2860 Query 124654 ATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATT 124713 | || ||||||||||| ||||| || || ||| | |||||| | || || | | |||| Sbjct 2859 ACCAGCAAAGGCTTATCTTTGCCGGCAAGCAACTCGAGGATGGCCGTACCCTTGCCGATT 2800 Query 124714 ATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAA 124772 | || || ||||| || ||||| | || ||||| | ||| | | ||||| || ||| Sbjct 2799 ACAACATCCAAAAGGAGTCAACCCTTCACTTGGTCCTCCGTCTTAGGGGTGGCATGCAAA 2740 Query 124773 AATTC 124777 |||| Sbjct 2739 TATTC 2735 >seq181690 Length=5866 Score = 122 bits (134), Expect = 1e-22 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | || || || ||||| || || ||||| | ||| | || Sbjct 3417 ATGCAAATATTTGTGAAAACCCTCACAGGGAAGACCATAACCCTTGAGGTGGAGAGTTCG 3358 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| || |||| || || ||||||||||| || || || || || || || Sbjct 3357 GATACCATTGACAACGTTAAGGCA-AAGATTCAAGATAAGGAGGGGATCCCCCCAGACCA 3299 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||||||||| |||||||| ||||| || |||||| | | || ||| ||||| || Sbjct 3298 GCAAAGGCTTATCTTTGCAGGGAAACAGTTGGAGGATGGGAGGACCCTAGCTGATTACAA 3239 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| ||||| || || || | ||||||||| | ||| | |||| ||||| Sbjct 3238 TATCCAAAAGGAGTCGACCCTTCATTTGGTTCTTCGTCTCAGAGGCGGTAT 3188 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || || || || || | ||| | ||| | Sbjct 3645 ATGCAGATCTTTGTGAAAACCCTCACCGGTAAGACCATCACCCTTGAGGTGGAAAGCTCT 3586 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| |||| | || || || |||||||| ||||| || || || || || Sbjct 3585 GATACAATTGATAATGTCAAGGCAAAGATCCAAGATAAGGAAGGGATTCCCCCAGACCAG 3526 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||||||||| |||||||| ||||| || |||||| | | || ||| ||||| ||| Sbjct 3525 CAAAGGCTTATCTTTGCAGGGAAACAGTTGGAGGATGGGAGGACCCTAGCTGATTACAAT 3466 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || ||||| | || |||||| | ||| | |||| ||||| Sbjct 3465 ATCCAAAAGGAGTCAACCCTTCACTTGGTTCTTCGTCTCAGAGGCGGTAT 3416 Score = 120 bits (132), Expect = 5e-22 Identities = 170/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | || || || ||||| || || ||||| | || | || || | | Sbjct 3189 ATGCAAATATTTGTGAAAACCCTCACAGGGAAGACCATAACCCTTGA-AGTGGAG-AGTT 3132 Query 124599 --GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 ||||| ||| || |||| || || ||||||||||| || || || ||||| || Sbjct 3131 CGGATACCATTGACAACGTTAAGGCA-AAGATTCAAGATAAGGAGGGGATCCCACCAGAC 3073 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || ||||||||||| ||||| |||||||| | || || | || || | | ||||| Sbjct 3072 CAGCAAAGGCTTATCTTTGCTGGAAAACAGCTTGAAGACGGACGCACCCTTGCGGATTAC 3013 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||| ||||| || | || |||||| | |||||| | || ||||| Sbjct 3012 AATATTCAAAAGGAATCGACCCTTCACTTGGTTCTGCGTTTAAGGGGCGGTAT 2960 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA- 124597 ||||| || || | |||||| | ||||| || || || ||| | || | || || | Sbjct 2733 ATGCAGATTTTCGTGAAGACATTGACAGGGAAGACCATCACTTTGGA-AGTGGAGAACTC 2675 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | || || |||||||| ||||| ||||| || || ||||| Sbjct 2674 TGACACTATTGATAACGTGAAGTCAAAGATTCAAGACAAAGAGGGTATTCCGCCAGATCA 2615 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || | || ||||||||||| || | ||||| | || || | | || ||||| Sbjct 2614 GCAGAGATTGATCTTTGCAGGAAAGCAGCTGGAGGACGGCCGTACCCTCGCTGACTATAA 2555 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || ||||| ||||| || | |||||||| | || | ||||||||| Sbjct 2554 CATCCAAAAGGAATCCACCCTTCATTTGGTCCTTCGCCTCCGAGGTGGT 2506 >seq194543 Length=10949 Score = 102 bits (112), Expect = 1e-16 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| || | || || || || |||||||| || || | || | || ||| Sbjct 3482 ATGCAAATCTTCGTCAAAACCCTTACTGGCAAAACAATTACCTTGGAAGTCGAGAGCTC- 3540 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| || |||| | || ||||| |||||||||||||| || || || ||||| Sbjct 3541 TGATACTATCGATAATGTCAAGGCCAAAATCCAAGATAAAGAAGGGATTCCTCCAGATCA 3600 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | | |||||||| || || || || || ||| | || || ||| ||||||||| Sbjct 3601 GCAGCGTTTGATTTTTGCCGGTAAGCAGTTGGAAGATGGGCGGACCCTAGCAGATTATAA 3660 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747 ||| || || || || || |||||| |||| Sbjct 3661 TATCCAGAAGGAGTCGACGTTGCATCTGGT 3690 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | ||||| | || || || || || ||| | ||| | || | Sbjct 3710 ATGCAGATATTTGTCAAGACTTTGACTGGGAAGACAATTACTCTGGAGGTGGAGAGTTCT 3769 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| | || || || || ||||| || || || || ||||||||| Sbjct 3770 GATACAATTGACAATGTGAAGGCTAAGATACAGGATAAGGAGGGGATTCCGCCTGATCAA 3829 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | |||||||| || || || || || ||| | || || ||| ||||||||| Sbjct 3830 CAGAGATTGATTTTTGCTGGGAAGCAGTTGGAAGATGGGCGGACTCTAGCTGATTATAAT 3889 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || || || || ||||| | || | || ||||| | || || ||| Sbjct 3890 ATCCAGAAGGAGTCAACCCTCCACCTTGTCCTACGTCTGCGTGGGGGT 3937 >seq160375 Length=3367 Score = 96.9 bits (106), Expect = 5e-15 Identities = 163/235 (69%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 124535 TACA-ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAG 124593 |||| ||||| || ||| | || || || || ||||| || || || | ||| | ||| Sbjct 1385 TACAGATGCAGATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAAA 1326 Query 124594 CAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTG 124653 || || ||| ||| | || ||||||||||| || || || || ||||| | Sbjct 1325 GCTCCGACACCATTGATAACGTGAAGGCTAAAATTCAAGACAAGGAGGGAATCCCACCAG 1266 Query 124654 ATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATT 124713 | || || ||||||||||| || ||||| ||||| ||||| | || || || | |||| Sbjct 1265 ACCAGCAGAGGCTTATTTTCGCTGGAAAGCAATTGGAGGACGGCCGTACCTTGGCTGATT 1206 Query 124714 ATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | || || || || || || || | || ||||| | ||| | || |||||||| Sbjct 1205 ACAACATCCAGAAGGAGTCCACCCTTCACTTGGTGCTCCGTCTCCGTGGTGGTAT 1151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 753565443030400