Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq176217 131 3e-25
seq181690 122 1e-22
seq194543 102 1e-16
seq160375 96.9 5e-15
>seq176217
Length=4970
Score = 131 bits (144), Expect = 3e-25
Identities = 178/247 (72%), Gaps = 1/247 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||||||||| | ||||| || ||||| ||||| || ||| ||||| | ||| |
Sbjct 2746 ATGCAAATATTCGTGAAGACCCTGACAGGAAAAACCATCACTTTAGAGGTCGAAAGCTCT 2687
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| |||||| ||| | ||| || || || || || ||||| || || || || ||
Sbjct 2686 GACACAATTGATAACGTCAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 2627
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||||||||||||||||| || || ||| | ||||| | || || | | ||||| |||
Sbjct 2626 CAAAGGCTTATTTTTGCCGGCAAGCAACTCGAGGACGGCCGTACCCTTGCCGATTACAAT 2567
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTC 124777
|| ||||| ||||| || | |||||||| | ||| | ||||||| || ||| ||||
Sbjct 2566 ATCCAAAAGGAATCCACCCTCCATTTGGTGCTCCGTCTCAGAGGTGGCATGCAAATATTC 2507
Query 124778 ATAAAAA 124784
| ||||
Sbjct 2506 GTGAAAA 2500
Score = 96.9 bits (106), Expect = 5e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||||||||| | || || || || || || || || ||| | ||| | |||
Sbjct 2518 ATGCAAATATTCGTGAAAACTCTCACCGGGAAGACCATCACTTTGGAGGTGGAAAGTTCC 2459
Query 124599 GATACAATTTCTAA-TTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||||||| ||| |||| || || || |||||||| ||||| || || || || ||
Sbjct 2458 GATACAATTGATAACGTTAAGGCA-AAGATCCAAGATAAGGAAGGGATTCCCCCGGACCA 2400
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| ||||| || ||||| || |||||| | |||||| | | || ||| ||||| ||
Sbjct 2399 GCAGAGGCTGATCTTTGCTGGGAAACAACTGGAGGATGGGAGGACCCTAGCGGATTACAA 2340
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747
|| ||||| || || || |||| |||||
Sbjct 2339 CATCCAAAAGGAGTCGACCCTGCACTTGGT 2310
Score = 93.3 bits (102), Expect = 6e-14
Identities = 169/245 (69%), Gaps = 2/245 (1%)
Strand=Plus/Minus
Query 124535 TACA-ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAG 124593
|||| ||||| || || | || || || ||||| ||||| || ||| | ||| | |||
Sbjct 2979 TACAGATGCAGATCTTCGTGAAAACCCTGACAGGAAAAACCATCACTTTGGAGGTCGAAA 2920
Query 124594 CAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTG 124653
||| || ||| ||| | ||| || || || || || ||||| || || || |
Sbjct 2919 GCTCTGACACTATTGATAACGTCAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAG 2860
Query 124654 ATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATT 124713
| || ||||||||||| ||||| || || ||| | |||||| | || || | | ||||
Sbjct 2859 ACCAGCAAAGGCTTATCTTTGCCGGCAAGCAACTCGAGGATGGCCGTACCCTTGCCGATT 2800
Query 124714 ATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAA 124772
| || || ||||| || ||||| | || ||||| | ||| | | ||||| || |||
Sbjct 2799 ACAACATCCAAAAGGAGTCAACCCTTCACTTGGTCCTCCGTCTTAGGGGTGGCATGCAAA 2740
Query 124773 AATTC 124777
||||
Sbjct 2739 TATTC 2735
>seq181690
Length=5866
Score = 122 bits (134), Expect = 1e-22
Identities = 167/231 (72%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||||||| | || || || ||||| || || ||||| | ||| | ||
Sbjct 3417 ATGCAAATATTTGTGAAAACCCTCACAGGGAAGACCATAACCCTTGAGGTGGAGAGTTCG 3358
Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||| ||| || |||| || || ||||||||||| || || || || || || ||
Sbjct 3357 GATACCATTGACAACGTTAAGGCA-AAGATTCAAGATAAGGAGGGGATCCCCCCAGACCA 3299
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
||||||||||| |||||||| ||||| || |||||| | | || ||| ||||| ||
Sbjct 3298 GCAAAGGCTTATCTTTGCAGGGAAACAGTTGGAGGATGGGAGGACCCTAGCTGATTACAA 3239
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
||| ||||| || || || | ||||||||| | ||| | |||| |||||
Sbjct 3238 TATCCAAAAGGAGTCGACCCTTCATTTGGTTCTTCGTCTCAGAGGCGGTAT 3188
Score = 122 bits (134), Expect = 1e-22
Identities = 165/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| | || || || || || || || || || | ||| | ||| |
Sbjct 3645 ATGCAGATCTTTGTGAAAACCCTCACCGGTAAGACCATCACCCTTGAGGTGGAAAGCTCT 3586
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||||||| |||| | || || || |||||||| ||||| || || || || ||
Sbjct 3585 GATACAATTGATAATGTCAAGGCAAAGATCCAAGATAAGGAAGGGATTCCCCCAGACCAG 3526
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||||||||||| |||||||| ||||| || |||||| | | || ||| ||||| |||
Sbjct 3525 CAAAGGCTTATCTTTGCAGGGAAACAGTTGGAGGATGGGAGGACCCTAGCTGATTACAAT 3466
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| ||||| || ||||| | || |||||| | ||| | |||| |||||
Sbjct 3465 ATCCAAAAGGAGTCAACCCTTCACTTGGTTCTTCGTCTCAGAGGCGGTAT 3416
Score = 120 bits (132), Expect = 5e-22
Identities = 170/233 (73%), Gaps = 6/233 (3%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||||||| | || || || ||||| || || ||||| | || | || || | |
Sbjct 3189 ATGCAAATATTTGTGAAAACCCTCACAGGGAAGACCATAACCCTTGA-AGTGGAG-AGTT 3132
Query 124599 --GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655
||||| ||| || |||| || || ||||||||||| || || || ||||| ||
Sbjct 3131 CGGATACCATTGACAACGTTAAGGCA-AAGATTCAAGATAAGGAGGGGATCCCACCAGAC 3073
Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715
|| ||||||||||| ||||| |||||||| | || || | || || | | |||||
Sbjct 3072 CAGCAAAGGCTTATCTTTGCTGGAAAACAGCTTGAAGACGGACGCACCCTTGCGGATTAC 3013
Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
||||||||||| ||||| || | || |||||| | |||||| | || |||||
Sbjct 3012 AATATTCAAAAGGAATCGACCCTTCACTTGGTTCTGCGTTTAAGGGGCGGTAT 2960
Score = 91.5 bits (100), Expect = 2e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA- 124597
||||| || || | |||||| | ||||| || || || ||| | || | || || |
Sbjct 2733 ATGCAGATTTTCGTGAAGACATTGACAGGGAAGACCATCACTTTGGA-AGTGGAGAACTC 2675
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||| || ||| ||| | || || |||||||| ||||| ||||| || || |||||
Sbjct 2674 TGACACTATTGATAACGTGAAGTCAAAGATTCAAGACAAAGAGGGTATTCCGCCAGATCA 2615
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| || | || ||||||||||| || | ||||| | || || | | || |||||
Sbjct 2614 GCAGAGATTGATCTTTGCAGGAAAGCAGCTGGAGGACGGCCGTACCCTCGCTGACTATAA 2555
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766
|| ||||| ||||| || | |||||||| | || | |||||||||
Sbjct 2554 CATCCAAAAGGAATCCACCCTTCATTTGGTCCTTCGCCTCCGAGGTGGT 2506
>seq194543
Length=10949
Score = 102 bits (112), Expect = 1e-16
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597
|||||||| || | || || || || |||||||| || || | || | || |||
Sbjct 3482 ATGCAAATCTTCGTCAAAACCCTTACTGGCAAAACAATTACCTTGGAAGTCGAGAGCTC- 3540
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|||||| || |||| | || ||||| |||||||||||||| || || || |||||
Sbjct 3541 TGATACTATCGATAATGTCAAGGCCAAAATCCAAGATAAAGAAGGGATTCCTCCAGATCA 3600
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| | | |||||||| || || || || || ||| | || || ||| |||||||||
Sbjct 3601 GCAGCGTTTGATTTTTGCCGGTAAGCAGTTGGAAGATGGGCGGACCCTAGCAGATTATAA 3660
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747
||| || || || || || |||||| ||||
Sbjct 3661 TATCCAGAAGGAGTCGACGTTGCATCTGGT 3690
Score = 91.5 bits (100), Expect = 2e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| |||||| | ||||| | || || || || || ||| | ||| | || |
Sbjct 3710 ATGCAGATATTTGTCAAGACTTTGACTGGGAAGACAATTACTCTGGAGGTGGAGAGTTCT 3769
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||||||| ||| | || || || || ||||| || || || || |||||||||
Sbjct 3770 GATACAATTGACAATGTGAAGGCTAAGATACAGGATAAGGAGGGGATTCCGCCTGATCAA 3829
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| || | |||||||| || || || || || ||| | || || ||| |||||||||
Sbjct 3830 CAGAGATTGATTTTTGCTGGGAAGCAGTTGGAAGATGGGCGGACTCTAGCTGATTATAAT 3889
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766
|| || || || ||||| | || | || ||||| | || || |||
Sbjct 3890 ATCCAGAAGGAGTCAACCCTCCACCTTGTCCTACGTCTGCGTGGGGGT 3937
>seq160375
Length=3367
Score = 96.9 bits (106), Expect = 5e-15
Identities = 163/235 (69%), Gaps = 1/235 (0%)
Strand=Plus/Minus
Query 124535 TACA-ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAG 124593
|||| ||||| || ||| | || || || || ||||| || || || | ||| | |||
Sbjct 1385 TACAGATGCAGATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAAA 1326
Query 124594 CAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTG 124653
|| || ||| ||| | || ||||||||||| || || || || ||||| |
Sbjct 1325 GCTCCGACACCATTGATAACGTGAAGGCTAAAATTCAAGACAAGGAGGGAATCCCACCAG 1266
Query 124654 ATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATT 124713
| || || ||||||||||| || ||||| ||||| ||||| | || || || | ||||
Sbjct 1265 ACCAGCAGAGGCTTATTTTCGCTGGAAAGCAATTGGAGGACGGCCGTACCTTGGCTGATT 1206
Query 124714 ATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
| || || || || || || || | || ||||| | ||| | || ||||||||
Sbjct 1205 ACAACATCCAGAAGGAGTCCACCCTTCACTTGGTGCTCCGTCTCCGTGGTGGTAT 1151
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 753565443030400
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