Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq160375 104 3e-17 seq176217 100 3e-16 seq116321 100 3e-16 seq181690 91.5 2e-13 seq190061 84.2 2e-11 >seq160375 Length=3367 Score = 104 bits (114), Expect = 3e-17 Identities = 159/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| || | ||| |||||| || || ||||||||||||| || || | Sbjct 1165 ACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCCAAGGTACGGCC 1224 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || | ||||| |||||||| || || | ||||||||| | || | | |||||| Sbjct 1225 GTCCTCCAATTGCTTTCCAGCGAAAATAAGCCTCTGCTGGTCTGGTGGGATTCCCTCCTT 1284 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 || | ||| |||| | || | | | | |||||| |||||| || | |||| Sbjct 1285 GT-CTTGAATTTTAGCCTTCACGTTATCAATGGTGTCGGAGCTTTCCACCTCCAAGGTGA 1343 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACG 43190 |||| ||||| || || || || |||||||| ||||| | |||| Sbjct 1344 TGGTCTTGCCGGTGAGGGTTTTCACAAAGATCTGCATCTGTACG 1387 Score = 100 bits (110), Expect = 3e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || | ||| | |||||| || | ||| ||||| || || || ||||||||| Sbjct 470 CCACCCCTCAGACGGAGCACCAAGTGTAGGGTGGATTCCTTCTGGATGTTATAATCAGCC 529 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || || | || || |||||||| || ||||| ||||| | |||||| || | || Sbjct 530 AAGGTACGGCCATCTTCAAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGTGGG 589 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCG---CTCGATTC 43132 | | |||||||||| ||| || |||| ||| | | | |||||| ||| || Sbjct 590 ATCCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTC---TC 645 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | |||||||||||||| || | ||||| |||||||| ||||| Sbjct 646 AACCTCCAAGGTGATGGTTTTGCCGGTCAAGGTCTTAACAAAGATCTGCAT 696 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/208 (72%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 42980 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 43039 ||||| ||| ||| || ||||| ||||||||||||| || || | || || ||||| Sbjct 37 ATGCAGGGTGGACTCTTTCTGAATGTTGTAATCAGCCAAGGTACGGCCATCCTCAAGCTG 96 Query 43040 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 |||||||||||| ||||| | |||||| || | || | | |||||| ||| ||| || Sbjct 97 CTTACCAGCGAAGATGAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTATCCTGGATCTT 156 Query 43100 TTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGC 43155 || | ||| | | | ||||| |||| || || || | ||||||||||||| Sbjct 157 GGCCTTCA-CGTTGTCAATTGTGTCGGAGCTC---TCAACCTCCAAGGTGATGGTTTTGC 212 Query 43156 CCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || || || || ||||| ||||| Sbjct 213 CGGTGAGGGTTTTCACGAAGATCTGCAT 240 >seq176217 Length=4970 Score = 100 bits (110), Expect = 3e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | ||| | ||||||||| | ||| |||||||| ||||||||||| || Sbjct 2520 CCACCTCTGAGACGGAGCACCAAATGGAGGGTGGATTCCTTTTGGATATTGTAATCGGCA 2579 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || |||| || || ||||| || || || || || | |||||||| | || Sbjct 2580 AGGGTACGGCCGTCCTCGAGTTGCTTGCCGGCAAAAATAAGCCTTTGCTGGTCTGGGGGA 2639 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | | ||||||||| ||| || ||||| | | | ||||| ||| ||| Sbjct 2640 ATTCCTTCCTTGTCCTGGATCTTAGCTTTGACGTTATCAATTGTGTCAGAGCT---TTCG 2696 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | ||||||||||| || || || ||||| || || |||||||| Sbjct 2697 ACCTCTAAAGTGATGGTTTTTCCTGTCAGGGTCTTCACGAATATTTGCAT 2746 >seq116321 Length=1411 Score = 100 bits (110), Expect = 3e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || | ||| | ||||||||| | || |||||| |||||||||||||| ||| Sbjct 1090 CCACCCCTGAGACGGAGCACCAAATGAAGGGTAGACTCCTTCTGAATATTGTAATCGGCC 1031 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||||| |||| || || || || || ||||| ||||| | ||||||||| | || Sbjct 1030 AAGGTCCGACCGTCCTCGAGTTGTTTTCCGGCGAAGATGAGCCTCTGCTGGTCTGGTGGG 971 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | | |||||||||| ||| || |||| | | | || || |||| ||| Sbjct 970 ATACCCTCCTTGTCCTGGATCTTAGCCTTGACGTTATCGATGGTATCTGAGCTC---TCC 914 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | |||||||| || || || | ||||| || ||||| ||||| Sbjct 913 ACCTCCAAAGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 864 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || | ||| | |||||| || | ||| ||||| || || |||||||||||| Sbjct 1318 CCACCCCTCAGACGGAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGCC 1259 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || || | || || |||||||| || ||||| ||||| | |||||| || | || Sbjct 1258 AAGGTACGGCCATCTTCAAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGTGGG 1199 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 43132 | | |||||||||| ||| || |||| ||| | | | ||||| |||| || Sbjct 1198 ATCCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTC---TC 1143 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | || ||||| || || || || ||||| || ||||| ||||| Sbjct 1142 GACCTCCAAGGTAATGGTCTTTCCGGTCAGGGTCTTGACGAAGATCTGCAT 1092 >seq181690 Length=5866 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || |||||||||| ||||| || | || |||||||||||||||||||| || Sbjct 2963 CCGCCCCTTAAACGCAGAACCAAGTGAAGGGTCGATTCCTTTTGAATATTGTAATCCGCA 3022 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || |||| || ||||| || ||||| || || || | |||||||| | || Sbjct 3023 AGGGTGCGTCCGTCTTCAAGCTGTTTTCCAGCAAAGATAAGCCTTTGCTGGTCTGGTGGG 3082 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA---TTCC 43133 | | |||||| | | ||| | |||| | | ||| | || | || | ||| ||| Sbjct 3083 ATCCCCTCCTTAT-CTTGAATCTTTGCCTTAACGTTGTCAATG-GTATC-CGAACTCTCC 3139 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | || ||||| || || || || || || ||||| |||||||| Sbjct 3140 ACTTCAAGGGTTATGGTCTTCCCTGTGAGGGTTTTCACAAATATTTGCAT 3189 Score = 82.4 bits (90), Expect = 9e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | ||| | |||||||| | || ||||||||| |||||||||||||| Sbjct 3191 CCGCCTCTGAGACGAAGAACCAAATGAAGGGTCGACTCCTTTTGGATATTGTAATCAGCT 3250 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || |||| | | || || | ||| || || || || || || | |||||||| | || Sbjct 3251 AGGGTCCTCCCATCCTCCAACTGTTTCCCTGCAAAGATAAGCCTTTGCTGGTCTGGGGGG 3310 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA---TTCC 43133 | | |||||| | | ||| | |||| | | ||| | || | || | ||| ||| Sbjct 3311 ATCCCCTCCTTAT-CTTGAATCTTTGCCTTAACGTTGTCAATG-GTATC-CGAACTCTCC 3367 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | || ||||| || || || || || || ||||| |||||||| Sbjct 3368 ACCTCAAGGGTTATGGTCTTCCCTGTGAGGGTTTTCACAAATATTTGCAT 3417 >seq190061 Length=8145 Score = 84.2 bits (92), Expect = 2e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 60073 GCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTAC 60131 || ||| ||||||||| |||| ||||||||||||||||| ||||||||||||||||||| Sbjct 1227 GCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGAAATACTCACCACTATACTAC 1169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570386605012840