Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq188192 109 8e-19 seq194543 93.3 6e-14 seq156113 93.3 6e-14 seq162333 91.5 2e-13 >seq188192 Length=7493 Score = 109 bits (120), Expect = 8e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 |||||||| |||||||| || |||| ||| | || || || || || || || ||| Sbjct 4787 GTTCCACCCCTAAGTCTCAAAACCAGATGAAGTGTTGACTCCTTCTGGATGTTGTAGTCT 4846 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||||||| || ||| || |||||||| ||||||||||||||||| || |||||||| Sbjct 4847 GCTAGAGTTCGGCCATCTTCCAATTGTTTGCCAGCAAAAATCAATCTCTGTTGATCCGGC 4906 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||| || || || Sbjct 4907 GGGATACCTTCCTTGTCCTG 4926 >seq194543 Length=10949 Score = 93.3 bits (102), Expect = 6e-14 Identities = 152/227 (67%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| || | || | |||| ||| || || || || || ||||||||||||| Sbjct 3708 CCACCCCTCAACCTCAGCACCAGATGCAACGTCGACTCCTTCTGGATATTATAATCTGCT 3649 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || || || || || ||||||||||| | |||||||| |||||| Sbjct 3648 AGGGTCCGCCCATCTTCCAACTGCTTACCGGCAAAAATCAAACGCTGCTGATCTGGAGGA 3589 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||||||||| |||||| || || || ||| Sbjct 3588 ATCCCTTCTTTATCTTGGATTTTGGCCTTGACATTATCGATAGTATCAGAGCTCTCGACT 3529 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || | || |||||||| || || | ||||| | ||| |||||||| Sbjct 3528 TCCAAGGTAATTGTTTTGCCAGTAAGGGTTTTGACGAAGATTTGCAT 3482 >seq156113 Length=3066 Score = 93.3 bits (102), Expect = 6e-14 Identities = 152/227 (67%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| || | || | |||| ||| || || || || || || |||||||| | Sbjct 1112 CCACCCCTCAACCTCAGCACCAGATGCAACGTCGACTCCTTCTGGATGTTATAATCCGCT 1053 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || |||| | ||| || ||||| || ||||| |||||||| | ||||||||||||||| Sbjct 1052 AGGGTTCGCCCATCTTCCAATTGCTTACCAGCGAAAATCAACCGCTGCTGATCCGGAGGA 993 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||| || ||||| |||||| || || || ||| Sbjct 992 ATCCCTTCCTTGTCTTGGATTTTGGCCTTTACATTGTCGATAGTATCGGAGCTCTCGACT 933 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || | ||||||||||| || |||| ||||| | ||| || ||||| Sbjct 932 TCCAAGGTGATTGTTTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 886 >seq162333 Length=3517 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 |||||||| || || || || || ||||| | || || || || || || || || Sbjct 3158 GTTCCACCCCTGAGCCTCAAAACTAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCA 3099 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||| | | ||| ||||||||||| ||||| ||||||||||| || ||||| || Sbjct 3098 GCAAGAGTCCGACCATCTTCTAATTGTTTGCCAGCGAAAATCAATCTCTGTTGATCAGGT 3039 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||| ||||| || || || Sbjct 3038 GGAATGCCTTCCTTGTCCTG 3019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741665697301760