Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq188192 109 8e-19
seq194543 93.3 6e-14
seq156113 93.3 6e-14
seq162333 91.5 2e-13
>seq188192
Length=7493
Score = 109 bits (120), Expect = 8e-19
Identities = 108/140 (77%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107
|||||||| |||||||| || |||| ||| | || || || || || || || |||
Sbjct 4787 GTTCCACCCCTAAGTCTCAAAACCAGATGAAGTGTTGACTCCTTCTGGATGTTGTAGTCT 4846
Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167
| ||||||| || ||| || |||||||| ||||||||||||||||| || ||||||||
Sbjct 4847 GCTAGAGTTCGGCCATCTTCCAATTGTTTGCCAGCAAAAATCAATCTCTGTTGATCCGGC 4906
Query 146168 GGAATTCCTTCTTTATCTTG 146187
|| || ||||| || || ||
Sbjct 4907 GGGATACCTTCCTTGTCCTG 4926
>seq194543
Length=10949
Score = 93.3 bits (102), Expect = 6e-14
Identities = 152/227 (67%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
||||| || | || | |||| ||| || || || || || |||||||||||||
Sbjct 3708 CCACCCCTCAACCTCAGCACCAGATGCAACGTCGACTCCTTCTGGATATTATAATCTGCT 3649
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| || | | ||| || || || || || ||||||||||| | |||||||| ||||||
Sbjct 3648 AGGGTCCGCCCATCTTCCAACTGCTTACCGGCAAAAATCAAACGCTGCTGATCTGGAGGA 3589
Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230
|| |||||||||||||| |||||| || || || |||
Sbjct 3588 ATCCCTTCTTTATCTTGGATTTTGGCCTTGACATTATCGATAGTATCAGAGCTCTCGACT 3529
Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277
|| | || |||||||| || || | ||||| | ||| ||||||||
Sbjct 3528 TCCAAGGTAATTGTTTTGCCAGTAAGGGTTTTGACGAAGATTTGCAT 3482
>seq156113
Length=3066
Score = 93.3 bits (102), Expect = 6e-14
Identities = 152/227 (67%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
||||| || | || | |||| ||| || || || || || || |||||||| |
Sbjct 1112 CCACCCCTCAACCTCAGCACCAGATGCAACGTCGACTCCTTCTGGATGTTATAATCCGCT 1053
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| |||| | ||| || ||||| || ||||| |||||||| | |||||||||||||||
Sbjct 1052 AGGGTTCGCCCATCTTCCAATTGCTTACCAGCGAAAATCAACCGCTGCTGATCCGGAGGA 993
Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230
|| ||||| || ||||| |||||| || || || |||
Sbjct 992 ATCCCTTCCTTGTCTTGGATTTTGGCCTTTACATTGTCGATAGTATCGGAGCTCTCGACT 933
Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277
|| | ||||||||||| || |||| ||||| | ||| || |||||
Sbjct 932 TCCAAGGTGATTGTTTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 886
>seq162333
Length=3517
Score = 91.5 bits (100), Expect = 2e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107
|||||||| || || || || || ||||| | || || || || || || || ||
Sbjct 3158 GTTCCACCCCTGAGCCTCAAAACTAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCA 3099
Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167
| |||||| | | ||| ||||||||||| ||||| ||||||||||| || ||||| ||
Sbjct 3098 GCAAGAGTCCGACCATCTTCTAATTGTTTGCCAGCGAAAATCAATCTCTGTTGATCAGGT 3039
Query 146168 GGAATTCCTTCTTTATCTTG 146187
||||| ||||| || || ||
Sbjct 3038 GGAATGCCTTCCTTGTCCTG 3019
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741665697301760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |