Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq160375 114 8e-21 seq156113 105 4e-18 seq194317 104 2e-17 seq194543 100 2e-16 seq155647 96.9 2e-15 seq176217 86.0 4e-12 seq116321 86.0 4e-12 seq181690 84.2 1e-11 >seq160375 Length=3367 Score = 114 bits (126), Expect = 8e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || || ||||| |||||||| || | || |||| |||| Sbjct 1169 AGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCCAAGGTACGGCCGTCC 1228 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 ||||| ||||| || |||||||| |||| ||||||||| || | | ||||||||| Sbjct 1229 TCCAATTGCTTTCCAGCGAAAATAAGCCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCT 1288 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 || || ||| | | | || | |||| ||| || |||| |||||||| Sbjct 1289 TGAATTTTAGCCTTCACGTTATCAATGGTGTCGGAGCTTTCCACCTCCAAGGTGATGGTC 1348 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||||||||| ||||||||||||||||||||| Sbjct 1349 TTGCCGGTGAGGGTTTTCACAAAGATCTGCATC 1381 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| |||||||| || | || |||| | || || | |||||| || ||||| Sbjct 50 TCTTTCTGAATGTTGTAATCAGCCAAGGTACGGCCATCCTCAAGCTGCTTACCAGCGAAG 109 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||||| |||||| || || | | |||||| || ||||| ||| | | | Sbjct 110 ATGAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTATCCTGGATCTTGGCCTTCACGTTG 169 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | |||| || || |||| |||||||||||||||||||| |||||||| Sbjct 170 TCAATTGTGTCGGAGCTCTCAACCTCCAAGGTGATGGTTTTGCCGGTGAGGGTTTTCACG 229 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 230 AAGATCTGCAT 240 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||||| || ||| ||||| ||||| || || | || |||| | || Sbjct 485 AGCACCAAGTGTAGGGTGGATTCCTTCTGGATGTTATAATCAGCCAAGGTACGGCCATCT 544 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || ||||| ||||||| |||||| || || | | ||||||||| Sbjct 545 TCAAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCC 604 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | |||| || || |||| ||||||||| Sbjct 605 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCAACCTCCAAGGTGATGGTT 664 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| | || || |||||||||||||| Sbjct 665 TTGCCGGTCAAGGTCTTAACAAAGATCTGCAT 696 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || ||| ||||| ||||||||||| | || |||| | || Sbjct 713 AGCACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCCAAGGTACGGCCATCC 772 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||| || ||||| ||||||| ||||||||| || | | ||||||||| Sbjct 773 TCAAGTTGCTTTCCGGCGAAGATGAGCCTCTGCTGGTCCGGTGGGATCCCCTCCTTGTCC 832 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | |||| || || |||| ||||| || Sbjct 833 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCAACCTCCAAAGTGATTGTC 892 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| | || ||||||||||||||||| Sbjct 893 TTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 924 >seq156113 Length=3066 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | || |||||||||||| || || || || ||||| ||||| || || | Sbjct 1112 CCACCCCTCAACCTCAGCACCAGATGCAACGTCGACTCCTTCTGGATGTTATAATCCGCT 1053 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || ||||| ||||| || |||||||| | ||||||||| || || Sbjct 1052 AGGGTTCGCCCATCTTCCAATTGCTTACCAGCGAAAATCAACCGCTGCTGATCCGGAGGA 993 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| || || ||||| || | | || | ||||| ||||| Sbjct 992 ATCCCTTCCTTGTCTTGGATTTTGGCCTTTACATTGTCGATAGTATCGGAGCTCTCGACT 933 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| ||||| ||||||||||| || ||||| || |||||||||||| Sbjct 932 TCCAAGGTGATTGTTTTGCCGGTTAGGGTTTTGACGAAGATCTGCATC 885 >seq194317 Length=10706 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | || || ||||| | || ||| ||||| ||||||||||||| Sbjct 1306 CCGCCGCGAAGGCGGAGGACGAGGTGGAGCGTGGATTCCTTCTGGATGTTGTAGTCGGCT 1365 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || | |||| |||| ||||||||| ||||| || || ||||| ||||| || Sbjct 1366 AGAGTTCTTCCGTCCTCCAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGGTCTGGTGGT 1425 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || || ||||| ||| |||||||| | || | | || | || | ||||| || Sbjct 1426 ATGCCTTCTTTGTCCTGGATC-TTTGCTTTGACATTGTCGATGGTGTCAGAGGATTCAAC 1484 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | || |||||||| ||||| | ||||| || |||||||||||| Sbjct 1485 CTCTAGGGTTATGGTTTTCCCGGTTAAGGTTTTGACGAAGATCTGCATC 1533 >seq194543 Length=10949 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | || || ||||| | || ||||||||||||||||| |||| Sbjct 3252 CCGCCGCGTAGACGGAGGACGAGGTGAAGCGTGGACTCTTTCTGTATGTTGTAATCGGCG 3193 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| |||| |||| || | ||| || || || || || || |||||||| || || Sbjct 3192 AGCGTACGGCCGTCCTCGAGCTGTTTTCCAGCAAAGATTAGACGCTGCTGATCCGGAGGG 3133 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||| || ||| |||||||| | | | | || | ||||| |||||| Sbjct 3132 ATTCCTTCCTTATCCTGGATC-TTTGCTTTCACGTTGTCGATAGTATCGGAGCTTTCGAC 3074 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||| || || || || || |||||||| |||||||||||| Sbjct 3073 CTCGAGGGTGATTGTCTTACCAGTTAGGGTTTTCACGAAGATCTGCATC 3025 >seq155647 Length=3035 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 |||||||||||| | || || ||||| ||||||||||||| || || |||| Sbjct 2222 CAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTCCGACCGTC 2163 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 || | ||| ||||| ||||| ||||| || |||||||| || | || |||||||| Sbjct 2162 CTCGAGCTGTTTGCCAGCGAAGATGAGGCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTC 2103 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | || | | || | || | ||||| || || | || ||||| Sbjct 2102 CTGGATCTTAGCCTTGACATTGTCGATGGTGTCCGAGGATTCAACCTCGAGAGTTATGGT 2043 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || || ||||| || ||||||||||| Sbjct 2042 CTTACCCGTTAGGGTTTTGACGAAGATCTGCAT 2010 >seq176217 Length=4970 Score = 86.0 bits (94), Expect = 4e-12 Identities = 142/197 (72%), Gaps = 10/197 (5%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || || || |||||||| |||| || |||| | || || | |||||||| || || Sbjct 2784 TCCTTTTGGATGTTGTAATCGGCAAGGGTACGGCCATCCTCGAGTTGCTTGCCGGCAAAG 2843 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || |||| |||||||| ||| | | |||||||| ||||| ||||| || Sbjct 2844 ATAAGCCTTTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTA-GCTTT-GAC-- 2899 Query 34319 GCTATCGAATCG-GTC-GA---TTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTT 34373 | |||| ||| | ||| || |||||| |||| ||||||||||| || || || |||| Sbjct 2900 GTTATC-AATAGTGTCAGAGCTTTCGACCTCCAAAGTGATGGTTTTTCCTGTCAGGGTTT 2958 Query 34374 TCACAAAGATCTGCATC 34390 |||| |||||||||||| Sbjct 2959 TCACGAAGATCTGCATC 2975 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218 ||| || || || || | ||||||| || | ||| ||| || || ||||| ||||| Sbjct 1832 GAAACCACCTCGGAGGCGAAGCACCAAATGAAGAGTGGATTCCTTTTGGATGTTATAGTC 1891 Query 34219 GGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGAC 34278 || || ||| |||| |||| ||||||||||||||| || | || |||||| || Sbjct 1892 GGCAAGGGTGCGGCCGTCCTCCAGCTGCTTGCCTGCGAAGATCAACCTCTGCTGATCCGG 1951 Query 34279 GGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTC 34338 || | | |||||| || ||||| ||| | || | || | ||||| || Sbjct 1952 TGGAATCCCCTCCTTATCTTGGATCTTCGCCTTGACATTATCAATTGTATCGGAACTCTC 2011 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||| || || || || ||||| | || |||||||| |||||||| Sbjct 2012 AACCTCCAAGGTTATAGTCTTCCCGGTCAATGTCTTCACAAAAATCTGCAT 2062 >seq116321 Length=1411 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || ||| ||||| |||||||| || | || |||| | || Sbjct 1303 AGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGCCAAGGTACGGCCATCT 1244 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || ||||| ||||||| |||||| || || | | ||||||||| Sbjct 1243 TCAAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCC 1184 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | |||| ||||| |||| || ||||| Sbjct 1183 TGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCGACCTCCAAGGTAATGGTC 1124 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || ||||| || || || || ||||||||||| Sbjct 1123 TTTCCGGTCAGGGTCTTGACGAAGATCTGCAT 1092 >seq181690 Length=5866 Score = 84.2 bits (92), Expect = 1e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 34235 TCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTG 34294 || |||||||| || ||||| || || |||| |||||||| ||| | | ||||| Sbjct 3491 TCCTCCAACTGTTTCCCTGCAAAGATAAGCCTTTGCTGGTCTGGGGGAATCCCTTCCTTA 3550 Query 34295 TCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATG 34354 || |||||| ||| | || | || | ||| | ||| || || | |||||| Sbjct 3551 TCTTGGATCTTTGCCTTGACATTATCAATTGTATCAGAGCTTTCCACCTCAAGGGTGATG 3610 Query 34355 GTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || |||||||| ||||||||||||||||||||| Sbjct 3611 GTCTTACCGGTGAGGGTTTTCACAAAGATCTGCATC 3646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322283712699680