Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq181690 123 2e-23 seq160375 114 1e-20 seq176217 107 2e-18 seq116321 107 2e-18 seq155647 82.4 6e-11 >seq181690 Length=5866 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTC-GTTCAGTTGGCGATCGTCGTC 45186 |||||||| || || ||||||||||||||||||||| | | | | | | || || Sbjct 2753 ACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGCTAAAGTC-CTTCCATCCTC 2811 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || |||||| || || || ||||||| ||| || || || || | ||||||||||||| Sbjct 2812 CAATTGTTTCCCTGCAAAGATCAACCTCTGCTGATCCGGCGGAATACCCTCCTTGTCCTG 2871 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||||||| ||| || | | |||| || ||||||||||| || || ||||| Sbjct 2872 AATTTTTGCCTTTACGTTGTCAATTGTGTCTGAACTCTCCACCTCCAAAGTGATAGTCTT 2931 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| |||| ||||| |||||||||||||| Sbjct 2932 GCCTGTCAAGGTCTTAACAAAGATTTGCAT 2961 >seq160375 Length=3367 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| |||| | | |||||||| || ||| |||||||||||||||||||| | Sbjct 698 CCACCCCTCAGACGGAGCACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCC 757 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | || | || || ||||| ||||||||||| || | || ||| ||||| || || Sbjct 758 AAGGTACGGCCATCCTCAAGTTGCTTTCCGGCGAAGATGAGCCTCTGCTGGTCCGGTGGG 817 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||||||| || || ||| || | | | |||| | ||| ||| Sbjct 818 ATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCAACC 877 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| || || |||||||| |||| |||||||||||||| |||||| Sbjct 878 TCCAAAGTGATTGTCTTGCCGGTCAAGGTCTTCACAAAGATCTGCATG 925 Score = 113 bits (124), Expect = 4e-20 Identities = 154/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCA--GTT-GGCGATCGTCG 45184 |||||||| || ||| |||||||| ||||||||||| || || ||| ||| ||| Sbjct 944 ACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCCAAGGTACGGCCATCCTCG 1003 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || ||||||||||| || | || ||| ||||| || || | |||||||||||| Sbjct 1004 ---AGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCT 1060 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 |||||| ||| || | | |||| | ||||||||||| ||| || ||| Sbjct 1061 TGAATTTTCGCCTTCACGTTATCAATAGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTC 1120 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| |||| ||||| |||||||| ||||| Sbjct 1121 TTGCCGGTCAAGGTCTTAACAAAGATCTGCAT 1152 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||||||| |||||||| || || || |||| ||| Sbjct 1172 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCCAAGGTACGGCCGTCCTCC 1231 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||| ||||| ||||| || | || ||| ||||| || || | ||||||||||| | Sbjct 1232 AATTGCTTTCCAGCGAAAATAAGCCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGA 1291 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | |||| | |||||||||| ||| || |||||| Sbjct 1292 ATTTTAGCCTTCACGTTATCAATGGTGTCGGAGCTTTCCACCTCCAAGGTGATGGTCTTG 1351 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || ||||||||||| ||||| Sbjct 1352 CCGGTGAGGGTTTTCACAAAGATCTGCAT 1380 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| |||| | | |||||||| || ||| |||||||| ||||| || || | Sbjct 470 CCACCCCTCAGACGGAGCACCAAGTGTAGGGTGGATTCCTTCTGGATGTTATAATCAGCC 529 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | || | || || || || ||||||||||| || | || ||| || || || || Sbjct 530 AAGGTACGGCCATCTTCAAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGTGGG 589 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||||||| || || ||| || | | | |||| | ||| ||| Sbjct 590 ATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCAACC 649 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || || ||||| |||| ||||| |||||||| ||||| Sbjct 650 TCCAAGGTGATGGTTTTGCCGGTCAAGGTCTTAACAAAGATCTGCAT 696 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| |||||||| || |||||||| || || | || || Sbjct 260 ACCAAGTGGAGGGTGGATTCCTTCTGGATATTGTAGTCAGCCAAGGTACGGCCATCCTCA 319 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| ||||| || | || ||| || || || || | |||||||| ||| Sbjct 320 AGCTGCTTTCCAGCGAAGATGAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTATCCTGG 379 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| || ||||||||||| ||| || ||||| Sbjct 380 ATCTTGGCCTTCACGTTGTCAATGGTGTCAGAACTCTCCACCTCCAAGGTGATTGTCTTT 439 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| |||||||| || || ||||| Sbjct 440 CCAGTCAAGGTCTTCACGAAAATCTGCAT 468 >seq176217 Length=4970 Score = 107 bits (118), Expect = 2e-18 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCG--TTCAGTTGGCGATCGTCGT 45185 |||||||| || || ||||||||||||||||||||| | ||| | | || | Sbjct 2082 ACCAAGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGCTAAAGTCCTCC--CATCCT 2139 Query 45186 CCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCG 45245 ||| |||||| || || || ||||||| ||| ||||| || || | ||||||||||| Sbjct 2140 CCAATTGTTTCCCTGCAAAGATCAACCTCTGCTGGTCTGGCGGGATCCCCTCCTTGTCTT 2199 Query 45246 CAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCT 45305 || || ||| || | | | ||||| || ||| ||||||| ||| || |||| Sbjct 2200 GGATCTTCGCCTTCACATTATCGATGGTGTCCGAACTCTCAACCTCCAAGGTTATAGTCT 2259 Query 45306 TGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 | || |||| ||||| || |||||||||||| Sbjct 2260 TTCCAGTCAATGTCTTGACGAAGATTTGCATG 2291 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| || |||||| || |||||||| || || | | || ||| Sbjct 2310 ACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAATCCGCTAGGGTCCTCCCATCCTCC 2369 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 |||||||| || || || |||| || ||| ||||| || || | || ||||| || Sbjct 2370 AGTTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATCCCTTCCTTATCTTGG 2429 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| |||||| | | | || || |||||||||| || || ||||| Sbjct 2430 ATCTTTGCCTTAACGTTATCAATTGTATCGGAACTTTCCACCTCCAAAGTGATGGTCTTC 2489 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || ||||| ||||| || ||||||||| Sbjct 2490 CCGGTGAGAGTTTTCACGAATATTTGCATG 2519 >seq116321 Length=1411 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || |||||||||||| ||||| ||| || ||| |||| || Sbjct 1072 ACCAAATGAAGGGTAGACTCCTTCTGAATATTGTAATCGGCCAAGGTCCGACCGTCCTCG 1013 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||||||||||||||| || | || ||| ||||| || || | ||||||||||||| Sbjct 1012 AGTTGTTTTCCGGCGAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGG 953 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | || | ||||||||||| || || ||||| Sbjct 952 ATCTTAGCCTTGACGTTATCGATGGTATCTGAGCTCTCCACCTCCAAAGTGATGGTCTTT 893 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||| || ||||| ||||| Sbjct 892 CCGGTCAAGGTCTTGACGAAGATCTGCAT 864 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || ||||||||| || ||||||||| || || | || || Sbjct 844 ACCAAATGGAGAGTTGACTCCTTCTGGATATTGTAGTCGGCGAGGGTACGGCCATCCTCG 785 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || |||||||||||||| || | || ||| ||||| || || | ||||| ||||| | Sbjct 784 AGCTGTTTTCCGGCGAAGATGAGCCTCTGCTGGTCTGGTGGGATCCCCTCTTTGTCTTGA 725 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| || ||| ||||||| |||||| ||||| Sbjct 724 ATCTTAGCCTTCACGTTATCGATGGTGTCTGAACTCTCGACCTCCAAGGTAATAGTCTTT 665 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || ||||||||||| ||||| Sbjct 664 CCGGTGAGGGTTTTCACAAAGATCTGCAT 636 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| |||| | | |||||||| || ||| |||||||| |||||||| || Sbjct 1319 GCCACCCCTCAGACGGAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGC 1260 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || || | || || || || ||||||||||| || | || ||| || || || || Sbjct 1259 CAAGGTACGGCCATCTTCAAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGTGG 1200 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| || || ||| || | | | |||| | ||| || Sbjct 1199 GATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCGAC 1140 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| |||||| ||||| || ||||| ||||| || ||||| ||||| Sbjct 1139 CTCCAAGGTAATGGTCTTTCCGGTCAGGGTCTTGACGAAGATCTGCAT 1092 >seq155647 Length=3035 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| | | | |||| ||| ||||| ||||||||| |||||||||||| Sbjct 2236 CCACCTCTGAGGCGCAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCT 2177 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| |||| || || ||||| || ||||| || | || || ||||| || || Sbjct 2176 AGGGTCCGACCGTCCTCGAGCTGTTTGCCAGCGAAGATGAGGCGTTGCTGGTCCGGTGGG 2117 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||||||| || || ||| || | | | ||||| || ||| Sbjct 2116 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCCGAGGATTCAACC 2057 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 || | || || ||||| ||||| || || || || ||||| ||||| || Sbjct 2056 TCGAGAGTTATGGTCTTACCCGTTAGGGTTTTGACGAAGATCTGCATTTT 2007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394111226759263