Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq181690 96.9 3e-15 seq188192 95.1 9e-15 seq101090 82.4 6e-11 >seq181690 Length=5866 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| |||||| ||||| || ||||| || ||||| || || | || | | ||| Sbjct 3433 AAGAACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCAGCTAGGGTCCTCCCATC 3492 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||||| ||||| || ||| ||||||| ||||| || || ||| | ||||||||||| Sbjct 3493 CTCCAACTGTTTCCCTGCAAAGATAAGCCTTTGCTGGTCTGGGGGAATCCCTTCCTTATC 3552 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | | |||||| | ||| || ||| | || |||| ||||||| | Sbjct 3553 TTGGATCTTTGCCTTGACATTATCAATTGTATCAGAGCTTTCCACCTCAAGGGTGATGGT 3612 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||||| | ||||| ||||| || ||||| Sbjct 3613 CTTACCGGTGAGGGTTTTCACAAAGATCTGCAT 3645 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| |||| |||||| || || || || |||||||||||||| || Sbjct 2735 CCACCACGAAGACGAAGCACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGCT 2794 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | | ||| ||||||||||| || ||| |||| | || || |||||| || Sbjct 2795 AAAGTCCTTCCATCCTCCAATTGTTTCCCTGCAAAGATCAACCTCTGCTGATCCGGCGGA 2854 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || ||||| || ||||| | ||| || | ||| ||||| ||| Sbjct 2855 ATACCCTCCTTGTCCTGAATTTTTGCCTTTACGTTGTCAATTGTGTCTGAACTCTCCACC 2914 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||| | ||||| ||||| || || ||||| |||||||| Sbjct 2915 TCCAAAGTGATAGTCTTGCCTGTCAAGGTCTTAACAAAGATTTGCAT 2961 >seq188192 Length=7493 Score = 95.1 bits (104), Expect = 9e-15 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| |||| ||||| | |||| ||||||||||| || || || ||||||||||| || Sbjct 4789 TCCACCCCTAAGTCTCAAAACCAGATGAAGTGTTGACTCCTTCTGGATGTTGTAGTCTGC 4848 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | |||||||||||||||||| ||| | || | ||| ||||||||| || Sbjct 4849 TAGAGTTCGGCCATCTTCCAATTGTTTGCCAGCAAAAATCAATCTCTGTTGATCCGGCGG 4908 Query 18218 CACGCCTTCCTTATC 18232 | |||||||| || Sbjct 4909 GATACCTTCCTTGTC 4923 >seq101090 Length=1060 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| ||||| || ||||| ||||||||||| || | || || ||||||||||||| Sbjct 197 TGAAGGGTTGACTCCTTTTGGATGTTGTAGTCCGCAAGAGTCCGACCATCTTCCAATTGT 256 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||||| || | || | ||||||| |||| || | ||||||||| || Sbjct 257 TTGCCAGCGAAAATCAATCTTTGTGGATCAGGTGGAATGCCTTCCTTGTC 306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378418410479235