Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq197427 203 3e-47
seq194543 132 4e-26
seq155647 113 4e-20
seq156113 98.7 9e-16
seq160375 93.3 4e-14
seq176217 87.8 2e-12
>seq197427
Length=19924
Score = 203 bits (224), Expect = 3e-47
Identities = 584/885 (66%), Gaps = 30/885 (3%)
Strand=Plus/Minus
Query 57545 CATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTT 57604
||||||||| || | || ||| | || ||| | |||||||| || |||||||| || ||
Sbjct 14539 CATGTTTCCAATCAAGTACCCACAAATCTGGGAAATGTACAAGAAAGCAGAAGCCTCCTT 14480
Query 57605 TTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATT---CCCTCAA 57661
||||| | |||||||| || || || || || || | ||||| |||| |
Sbjct 14479 CTGGACGGCTGAAGAAGTCGATCTCTCCTCCGACCTCCGCCACTGGGAGGAAACCCTGAC 14420
Query 57662 AGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTAT 57721
|| ||| || | || || | ||||| | || || |||||||| || || |||||
Sbjct 14419 CGACGACGAGCGACACTTCATCACCCACGTCCTCGCCTTCTTCGCCGCCTCTGACGGTAT 14360
Query 57722 TGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATG 57781
|| ||||| ||| || || || | || || || || | ||||| |||
Sbjct 14359 CGTCTTGGAGAACCTGGCCGGCAGGTTCATGAAGGAGGTCCAGGTAGCTGAGGCCAGAGC 14300
Query 57782 CTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCAT 57841
||||||||| || ||| | ||||| || ||| | || || |||||||| || | |
Sbjct 14299 CTTTTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACAGCCTCTTGCT 14240
Query 57842 CGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAAT 57901
||| ||||| | ||||| ||||||| | || ||| |||||||||| || ||
Sbjct 14239 CGAGTCGTACATCAAGGATTCTAACGAGAAGGACCGGCTTTTCCACGCGATCGAGACGAT 14180
Query 57902 GCCC-GCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCA 57960
|| ||| | | |||||||| ||||| | |||| ||||| | | | | | |
Sbjct 14179 CCCTTGCG-TGGAAAAGAAGGCCAAGTGGGCCCTCAAGTGGATCGACGGTGGCGAGTCT- 14122
Query 57961 CGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCT 58020
||||||||| | | | || || || ||||||||| || ||||| || || ||||
Sbjct 14121 --TTCGCCGAGCGAATCGTTGCCTTTGCTTGCGTCGAAGGGATTTTCTTCTCCGGGAGCT 14064
Query 58021 T-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAAC 58079
| |||| | || || ||| | || || ||||| ||||||| || |||| || ||||
Sbjct 14063 TCTGCG-CGATCTTCTGGCTCAAAAAGCGCGGGTTGATGCCTGGGTTGACCTTCTCCAAC 14005
Query 58080 GAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTAC-----T 58134
|||||||| || | ||||| || | || |||||||| ||| | |||||
Sbjct 14004 GAGTTGATCTCAAGAGACGAAGGCTTGCACTGCGATTTTGCCTGCTTGCTGTACGAGTTG 13945
Query 58135 CTCACATTGTCAATAAACCGACGCG-GGATCGCATCTTGGACATTATCACCGAGGCGGTC 58193
|| || || | || | || ||| ||| || || || ||| | |||| |||||
Sbjct 13944 CTGAC----TC-AGAAGCTGA-GCGAGGAGCGAGTCAGGGGAATTGTGGCCGATGCGGTG 13891
Query 58194 GCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAAT 58253
| |||||| | ||||||||| ||| || || ||| || || | || |||||
Sbjct 13890 GAGATCGAGAGGGAGTTTGTCTGCGACGCGCTGCCGTGTGCTCTGGTGGGCATGAATGGC 13831
Query 58254 GATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGA 58313
||||||||| | || ||||| || || || || || || ||| | || ||||
Sbjct 13830 GATTTGATGAGCCAATATATTGAATTCGTCGCTGATAGGCTGTTG--GGTGCT--TTGGG 13775
Query 58314 GAGCGTCA----TTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGA 58369
| | | ||| | |||| ||||||||||||| ||| | |||||| | |
Sbjct 13774 GTATGGAAAAATGTACGATGCGAAGAATCCGTTTGATTGGATGGAGCTGATCAGTTTGCA 13715
Query 58370 GGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAA 58414
||| ||||||||||||||||| || | ||| | || || || ||
Sbjct 13714 GGGGAAGACAAACTTTTTCGAGAAGAGGGTTGGAGAGTACCAGAA 13670
>seq194543
Length=10949
Score = 132 bits (146), Expect = 4e-26
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| || || ||||| ||||| |||||||| |||| || ||| ||
Sbjct 3253 CATGCAGATCTTCGTCAAAACCCTGACTGGCAAGACGATCACGCTCGAGGTCGAAAGCTC 3312
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||||| | |||| | ||||| || ||| |||||||||||| | || || || ||
Sbjct 3313 CGACACTATCGACAACGTCAAGGCGAAAATCCAGGACAAGGAAGGTATCCCTCCAGATCA 3372
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | ||||| |||||||| || || ||||||| |||| | |||||||||
Sbjct 3373 GCAGAGGCTAATCTTCGCTGGAAAGCAACTGGAAGATGGGCGGACTTTAGCCGATTATAA 3432
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| || || ||||| |||||||| || || ||
Sbjct 3433 CATCCAGAAGGAATCCACTCTTCACCTAGTCCT 3465
Score = 98.7 bits (108), Expect = 9e-16
Identities = 151/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| || || || || || || || |||||| |||| || ||| |||
Sbjct 3026 ATGCAGATCTTCGTGAAAACCCTAACTGGTAAGACAATCACCCTCGAGGTCGAAAGCTCC 3085
Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|| | | |||| | || ||| || ||| | ||| |||||||| | || || || ||
Sbjct 3086 GATACTATCGACAACGTGAAAGCAAAGA-TCCAGGATAAGGAAGGAATCCCTCCGGATCA 3144
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||||||||||| || ||||| |||||| | || ||| || | |||||| ||
Sbjct 3145 GCAGCGTCTAATCTTTGCTGGAAAACAGCTCGAGGACGGCCGTACGCTCGCCGATTACAA 3204
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| || ||||| || || ||||| || || ||
Sbjct 3205 CATACAGAAAGAGTCCACGCTTCACCTCGTCCT 3237
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||| || || || || |||||||| || ||| | || || || ||
Sbjct 3482 ATGCAAATCTTCGTCAAAACCCTTACTGGCAAAACAATTACCTTGGAAGTCGAGAGCTCT 3541
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | |||| | ||||| | ||| || || ||||| | || || || |||
Sbjct 3542 GATACTATCGATAATGTCAAGGCCAAAATCCAAGATAAAGAAGGGATTCCTCCAGATCAG 3601
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371
|||||| | || || || || || ||||||||||| ||| | ||| ||||||||
Sbjct 3602 CAGCGTTTGATTTTTGCCGGTAAGCAGTTGGAAGATGGGCGGACCCT-AGCAGATTATAA 3660
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
|| || || || ||||| | |||||||| || || ||||||| ||
Sbjct 3661 TATCCAGAAGGAGTCGACGTTGCATCTGGTGCTGAGGTTGAGGGGTGG 3708
>seq155647
Length=3035
Score = 113 bits (124), Expect = 4e-20
Identities = 155/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247
|||| ||||| || ||||| || || || || || || || || || |||| ||||||
Sbjct 2005 CAAAAATGCAGATCTTCGTCAAAACCCTAACGGGTAAGACCATAACTCTCGAGGTTGAAT 2064
Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307
| || |||| |||| | ||||| | || ||||||||||||| | || || |
Sbjct 2065 CCTCGGACACCATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCACCGG 2124
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367
||||||| || || || ||||||||||||||| | || ||| | ||| | ||| |
Sbjct 2125 ACCAGCAACGCCTCATCTTCGCTGGCAAACAGCTCGAGGACGGTCGGACCCTAGCCGACT 2184
Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
| ||||| || || || ||||| ||||| ||||| ||
Sbjct 2185 ACAACATCCAGAAGGAGTCGACGCTTCACCTGGTGCT 2221
>seq156113
Length=3066
Score = 98.7 bits (108), Expect = 9e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| || || || || |||||||| |||||| | || || || |||
Sbjct 886 ATGCAGATCTTCGTCAAAACCCTAACCGGCAAAACAATCACCTTGGAAGTCGAGAGCTCC 945
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | |||| | || || | ||| ||||||||||| | || || || |||
Sbjct 946 GATACTATCGACAATGTAAAGGCCAAAATCCAAGACAAGGAAGGGATTCCTCCGGATCAG 1005
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371
||||| | || |||||||| || || |||||||| | || ||| ||||||||
Sbjct 1006 CAGCGGTTGATTTTCGCTGGTAAGCAATTGGAAGA-TGGGCGAACCCTAGCGGATTATAA 1064
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||| || || || ||||| | |||||||| || || ||||||| ||
Sbjct 1065 CATCCAGAAGGAGTCGACGTTGCATCTGGTGCTGAGGTTGAGGGGTGG 1112
>seq160375
Length=3367
Score = 93.3 bits (102), Expect = 4e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || ||||| |||| |||||||| |||||| | || ||||| |||
Sbjct 696 ATGCAGATCTTTGTTAAGACCTTGACCGGCAAAACCATCACCTTGGAGGTTGAGAGCTCC 637
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | ||||| | || ||||||||| || | || || || |||
Sbjct 636 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCACCGGATCAG 577
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | || || ||||| || || ||| | ||||| || || |||||||||
Sbjct 576 CAGAGGCTCATCTTCGCCGGAAAGCAGCTTGAAGATGGCCGTACCTTGGCTGATTATAAC 517
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|| || || ||||| || || || |||| || | |||||||| ||||
Sbjct 516 ATCCAGAAGGAATCCACCCTACACTTGGTGCTCCGTCTGAGGGGTGGTA 468
>seq176217
Length=4970
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
||||||||| ||||| ||||| |||||||| ||||| ||||| | || || ||| ||
Sbjct 2747 CATGCAAATATTCGTGAAGACCCTGACAGGAAAAACCATCACTTTAGAGGTCGAAAGCTC 2688
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || | |||||| | || |||||||||||| | || || |||||
Sbjct 2687 TGACACAATTGATAACGTCAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCA 2628
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||| | || || || || ||||| || | || ||| || | |||||| ||
Sbjct 2627 GCAAAGGCTTATTTTTGCCGGCAAGCAACTCGAGGACGGCCGTACCCTTGCCGATTACAA 2568
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|| ||||| ||||| || || ||| |||| ||
Sbjct 2567 TATCCAAAAGGAATCCACCCTCCATTTGGTGCT 2535
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 444650852867760
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