Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq197427 203 3e-47 seq194543 132 4e-26 seq155647 113 4e-20 seq156113 98.7 9e-16 seq160375 93.3 4e-14 seq176217 87.8 2e-12 >seq197427 Length=19924 Score = 203 bits (224), Expect = 3e-47 Identities = 584/885 (66%), Gaps = 30/885 (3%) Strand=Plus/Minus Query 57545 CATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTT 57604 ||||||||| || | || ||| | || ||| | |||||||| || |||||||| || || Sbjct 14539 CATGTTTCCAATCAAGTACCCACAAATCTGGGAAATGTACAAGAAAGCAGAAGCCTCCTT 14480 Query 57605 TTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATT---CCCTCAA 57661 ||||| | |||||||| || || || || || || | ||||| |||| | Sbjct 14479 CTGGACGGCTGAAGAAGTCGATCTCTCCTCCGACCTCCGCCACTGGGAGGAAACCCTGAC 14420 Query 57662 AGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTAT 57721 || ||| || | || || | ||||| | || || |||||||| || || ||||| Sbjct 14419 CGACGACGAGCGACACTTCATCACCCACGTCCTCGCCTTCTTCGCCGCCTCTGACGGTAT 14360 Query 57722 TGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATG 57781 || ||||| ||| || || || | || || || || | ||||| ||| Sbjct 14359 CGTCTTGGAGAACCTGGCCGGCAGGTTCATGAAGGAGGTCCAGGTAGCTGAGGCCAGAGC 14300 Query 57782 CTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCAT 57841 ||||||||| || ||| | ||||| || ||| | || || |||||||| || | | Sbjct 14299 CTTTTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACAGCCTCTTGCT 14240 Query 57842 CGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAAT 57901 ||| ||||| | ||||| ||||||| | || ||| |||||||||| || || Sbjct 14239 CGAGTCGTACATCAAGGATTCTAACGAGAAGGACCGGCTTTTCCACGCGATCGAGACGAT 14180 Query 57902 GCCC-GCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCA 57960 || ||| | | |||||||| ||||| | |||| ||||| | | | | | | Sbjct 14179 CCCTTGCG-TGGAAAAGAAGGCCAAGTGGGCCCTCAAGTGGATCGACGGTGGCGAGTCT- 14122 Query 57961 CGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCT 58020 ||||||||| | | | || || || ||||||||| || ||||| || || |||| Sbjct 14121 --TTCGCCGAGCGAATCGTTGCCTTTGCTTGCGTCGAAGGGATTTTCTTCTCCGGGAGCT 14064 Query 58021 T-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAAC 58079 | |||| | || || ||| | || || ||||| ||||||| || |||| || |||| Sbjct 14063 TCTGCG-CGATCTTCTGGCTCAAAAAGCGCGGGTTGATGCCTGGGTTGACCTTCTCCAAC 14005 Query 58080 GAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTAC-----T 58134 |||||||| || | ||||| || | || |||||||| ||| | ||||| Sbjct 14004 GAGTTGATCTCAAGAGACGAAGGCTTGCACTGCGATTTTGCCTGCTTGCTGTACGAGTTG 13945 Query 58135 CTCACATTGTCAATAAACCGACGCG-GGATCGCATCTTGGACATTATCACCGAGGCGGTC 58193 || || || | || | || ||| ||| || || || ||| | |||| ||||| Sbjct 13944 CTGAC----TC-AGAAGCTGA-GCGAGGAGCGAGTCAGGGGAATTGTGGCCGATGCGGTG 13891 Query 58194 GCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAAT 58253 | |||||| | ||||||||| ||| || || ||| || || | || ||||| Sbjct 13890 GAGATCGAGAGGGAGTTTGTCTGCGACGCGCTGCCGTGTGCTCTGGTGGGCATGAATGGC 13831 Query 58254 GATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGA 58313 ||||||||| | || ||||| || || || || || || ||| | || |||| Sbjct 13830 GATTTGATGAGCCAATATATTGAATTCGTCGCTGATAGGCTGTTG--GGTGCT--TTGGG 13775 Query 58314 GAGCGTCA----TTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGA 58369 | | | ||| | |||| ||||||||||||| ||| | |||||| | | Sbjct 13774 GTATGGAAAAATGTACGATGCGAAGAATCCGTTTGATTGGATGGAGCTGATCAGTTTGCA 13715 Query 58370 GGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAA 58414 ||| ||||||||||||||||| || | ||| | || || || || Sbjct 13714 GGGGAAGACAAACTTTTTCGAGAAGAGGGTTGGAGAGTACCAGAA 13670 >seq194543 Length=10949 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| || || ||||| ||||| |||||||| |||| || ||| || Sbjct 3253 CATGCAGATCTTCGTCAAAACCCTGACTGGCAAGACGATCACGCTCGAGGTCGAAAGCTC 3312 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | |||| | ||||| || ||| |||||||||||| | || || || || Sbjct 3313 CGACACTATCGACAACGTCAAGGCGAAAATCCAGGACAAGGAAGGTATCCCTCCAGATCA 3372 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | ||||| |||||||| || || ||||||| |||| | ||||||||| Sbjct 3373 GCAGAGGCTAATCTTCGCTGGAAAGCAACTGGAAGATGGGCGGACTTTAGCCGATTATAA 3432 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || ||||| |||||||| || || || Sbjct 3433 CATCCAGAAGGAATCCACTCTTCACCTAGTCCT 3465 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || || || || || || |||||| |||| || ||| ||| Sbjct 3026 ATGCAGATCTTCGTGAAAACCCTAACTGGTAAGACAATCACCCTCGAGGTCGAAAGCTCC 3085 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | |||| | || ||| || ||| | ||| |||||||| | || || || || Sbjct 3086 GATACTATCGACAACGTGAAAGCAAAGA-TCCAGGATAAGGAAGGAATCCCTCCGGATCA 3144 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||||||||| || ||||| |||||| | || ||| || | |||||| || Sbjct 3145 GCAGCGTCTAATCTTTGCTGGAAAACAGCTCGAGGACGGCCGTACGCTCGCCGATTACAA 3204 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || ||||| || || ||||| || || || Sbjct 3205 CATACAGAAAGAGTCCACGCTTCACCTCGTCCT 3237 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || || || || |||||||| || ||| | || || || || Sbjct 3482 ATGCAAATCTTCGTCAAAACCCTTACTGGCAAAACAATTACCTTGGAAGTCGAGAGCTCT 3541 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| | ||||| | ||| || || ||||| | || || || ||| Sbjct 3542 GATACTATCGATAATGTCAAGGCCAAAATCCAAGATAAAGAAGGGATTCCTCCAGATCAG 3601 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 |||||| | || || || || || ||||||||||| ||| | ||| |||||||| Sbjct 3602 CAGCGTTTGATTTTTGCCGGTAAGCAGTTGGAAGATGGGCGGACCCT-AGCAGATTATAA 3660 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || || ||||| | |||||||| || || ||||||| || Sbjct 3661 TATCCAGAAGGAGTCGACGTTGCATCTGGTGCTGAGGTTGAGGGGTGG 3708 >seq155647 Length=3035 Score = 113 bits (124), Expect = 4e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||| ||||| || ||||| || || || || || || || || || |||| |||||| Sbjct 2005 CAAAAATGCAGATCTTCGTCAAAACCCTAACGGGTAAGACCATAACTCTCGAGGTTGAAT 2064 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | || |||| |||| | ||||| | || ||||||||||||| | || || | Sbjct 2065 CCTCGGACACCATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCACCGG 2124 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 ||||||| || || || ||||||||||||||| | || ||| | ||| | ||| | Sbjct 2125 ACCAGCAACGCCTCATCTTCGCTGGCAAACAGCTCGAGGACGGTCGGACCCTAGCCGACT 2184 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | ||||| || || || ||||| ||||| ||||| || Sbjct 2185 ACAACATCCAGAAGGAGTCGACGCTTCACCTGGTGCT 2221 >seq156113 Length=3066 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || || || |||||||| |||||| | || || || ||| Sbjct 886 ATGCAGATCTTCGTCAAAACCCTAACCGGCAAAACAATCACCTTGGAAGTCGAGAGCTCC 945 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| | || || | ||| ||||||||||| | || || || ||| Sbjct 946 GATACTATCGACAATGTAAAGGCCAAAATCCAAGACAAGGAAGGGATTCCTCCGGATCAG 1005 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 ||||| | || |||||||| || || |||||||| | || ||| |||||||| Sbjct 1006 CAGCGGTTGATTTTCGCTGGTAAGCAATTGGAAGA-TGGGCGAACCCTAGCGGATTATAA 1064 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || ||||| | |||||||| || || ||||||| || Sbjct 1065 CATCCAGAAGGAGTCGACGTTGCATCTGGTGCTGAGGTTGAGGGGTGG 1112 >seq160375 Length=3367 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| |||| |||||||| |||||| | || ||||| ||| Sbjct 696 ATGCAGATCTTTGTTAAGACCTTGACCGGCAAAACCATCACCTTGGAGGTTGAGAGCTCC 637 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| || | || || || ||| Sbjct 636 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCACCGGATCAG 577 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||| || || ||| | ||||| || || ||||||||| Sbjct 576 CAGAGGCTCATCTTCGCCGGAAAGCAGCTTGAAGATGGCCGTACCTTGGCTGATTATAAC 517 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || ||||| || || || |||| || | |||||||| |||| Sbjct 516 ATCCAGAAGGAATCCACCCTACACTTGGTGCTCCGTCTGAGGGGTGGTA 468 >seq176217 Length=4970 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| |||||||| ||||| ||||| | || || ||| || Sbjct 2747 CATGCAAATATTCGTGAAGACCCTGACAGGAAAAACCATCACTTTAGAGGTCGAAAGCTC 2688 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | |||||| | || |||||||||||| | || || ||||| Sbjct 2687 TGACACAATTGATAACGTCAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCA 2628 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | || || || || ||||| || | || ||| || | |||||| || Sbjct 2627 GCAAAGGCTTATTTTTGCCGGCAAGCAACTCGAGGACGGCCGTACCCTTGCCGATTACAA 2568 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || ||||| ||||| || || ||| |||| || Sbjct 2567 TATCCAAAAGGAATCCACCCTCCATTTGGTGCT 2535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444650852867760