Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq197427 147 3e-30
seq190796 89.7 6e-13
seq180626 86.0 8e-12
>seq197427
Length=19924
Score = 147 bits (162), Expect = 3e-30
Identities = 422/645 (65%), Gaps = 8/645 (1%)
Strand=Plus/Plus
Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350
|| ||||| || || || | || |||||||| || || || || | ||| ||
Sbjct 13670 TTCTGGTACTCTCCAACCCTCTTCTCGAAAAAGTTTGTCTTCCCCTGCAAACTGATCAGC 13729
Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410
||||| ||||||||||||| | ||| ||| |||||| | | ||||| || | |
Sbjct 13730 TCCATCCAATCAAACGGATTCTTCGCATCGTACATTTTTCCATACCCCAAAGCACCCAAC 13789
Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470
| ||||| ||||||||||| |||||| |||||| || | |||||| || | ||
Sbjct 13790 AGCCTATCAGCGACGAATTCAATATATTGGCTCATCAAATCGCCATTCATGCCCACCAGA 13849
Query 33471 TTAACTGGAAGAGC--CACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAA 33528
| || || || | ||| | ||| || || || ||||||| | | ||
Sbjct 13850 GCACACGGCAGCGCGTCGCAG--ACAAACTCCCTCTCGATCTCCACCGCATCGGCCACAA 13907
Query 33529 TAAATCTAACGGTTTCTTCACTCGGTGGATG--TAATAAATGTTTAAACATCAAACATGC 33586
| || || || || ||| | || | | || || || ||| || ||
Sbjct 13908 TTCCCCTGACTCGCTCCTCGCTCAGCTTCTGAGTCAGCAACTCGTA--CAGCAAGCAGGC 13965
Query 33587 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGG 33646
||||||||||||| || |||||||| || || ||||| || || || | || ||
Sbjct 13966 AAAATCGCAGTGCAAGCCTTCGTCTCTTGAGATCAACTCGTTGGAGAAGGTCAACCCAGG 14025
Query 33647 CATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCC 33706
||| | || |||||||| ||||| || || | ||| ||||| ||||| || ||
Sbjct 14026 CATCAACCCGCGCTTTTTGAGCCAGAAGATCGCGCAGAAGCTCCCGGAGAAGAAAATCCC 14085
Query 33707 TTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTT 33766
||| || ||||||||||| | || ||| | || ||| | | ||||||||
Sbjct 14086 TTCGACGCAAGCAAAGGCAACGATTCGCTCGGCGAAAGACTCGCCACCGTCGATCCACTT 14145
Query 33767 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33826
| ||||| | ||||||||||| || ||||| ||||| || || || | || ||
Sbjct 14146 GAGGGCCCACTTGGCCTTCTTTTCCACGCAAGGGATCGTCTCGATCGCGTGGAAAAGCCG 14205
Query 33827 GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG 33886
|| || || ||| ||| || | || | |||| ||| || || |||||||| || ||
Sbjct 14206 GTCCTTCTCGTTAGAATCCTTGATGTACGACTCGAGCAAGAGGCTGTACATTTCGGAGTG 14265
Query 33887 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33931
||||| || ||||| || || || ||||| || ||| |||||
Sbjct 14266 GATGTTCTCGATGGCGATTTGGAAGCCGTAAAAGGCTCTGGCCTC 14310
>seq190796
Length=8466
Score = 89.7 bits (98), Expect = 6e-13
Identities = 78/97 (80%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641
|| || || |||||||||||||||||||||||| ||| | ||| || || || || |
Sbjct 3084 CAAGCAAAGTCGCAGTGCAGACCCTCGTCTCTAGAAATAAGTTCATTTGAGAATGTCAAG 3143
Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG 33678
|| ||||| || || | ||||||||||||||||||||
Sbjct 3144 CCTGGCATCAGTCCCCTCTTTTTAAGCCAAAATATGG 3180
>seq180626
Length=5659
Score = 86.0 bits (94), Expect = 8e-12
Identities = 152/222 (68%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 63423 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63482
|| || ||||| | || | || |||| |||| |||||| | |||||||| | |||
Sbjct 2941 CCCCCTTGATCAACATAACGGGCAGTGTCATTAAAAACTCGTAGCATTGGAACCACACCA 2882
Query 63483 TTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGAT 63542
|||||| | ||||| || || |||||| | || |||||||||||||| || ||
Sbjct 2881 TTTGATGTCCCATTTGTTCCACGGATATAACTCCCTGTGGCACGAATATTATGAACAGAG 2822
Query 63543 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATG 63602
| || ||||| || || || ||| | || || || || || ||||||||
Sbjct 2821 ACTCCGATTCCTCCAGCAGACTTGCTGATAACAGCACACTCCTTCAAAGTATCATAGATT 2762
Query 63603 CCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644
||||| ||||| ||||| ||||| | | ||| ||||||
Sbjct 2761 CCTTCAATGCTGTCATCTTTCATGCACACCAAAAAGCAGCTA 2720
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628241457837840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |