Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq194543 118 1e-21
seq181690 109 5e-19
seq176217 93.3 4e-14
seq194317 86.0 6e-12
seq156113 86.0 6e-12
seq155647 86.0 6e-12
>seq194543
Length=10949
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
|||||| |||| ||| | || | ||||| ||| |||||||| || ||||| ||||||
Sbjct 3253 GCCGCCGCGTAGACGGAGGACGAGGTGAAGCGTGGACTCTTTCTGTATGTTGTAATCGGC 3194
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| || | ||| ||||||||||| |||||| |||| ||||| |||||||| |||||
Sbjct 3193 GAGCGTACGGCCGTCCTCGAGCTGTTTTCCAGCAAAGATTAGACGCTGCTGATCCGGAGG 3134
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||| || || ||| ||| ||| | | || | || |||| | || ||
Sbjct 3133 GATTCCTTCCTTATCCTGGATCTTTGCTTTCACGTTGTCGATAGTATCGGAGCTTTCGAC 3074
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||| | ||| | ||||| || || | ||||| ||||| || |||||
Sbjct 3073 CTCGAGGGTGATTGTCTTACCAGTTAGGGTTTTCACGAAGATCTGCAT 3026
Score = 98.7 bits (108), Expect = 1e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
||||| || | ||| | |||| ||||| || || || || || ||||||||||||
Sbjct 3480 CCGCCACGGAGACGGAGGACTAGGTGAAGAGTGGATTCCTTCTGGATGTTATAATCGGCT 3421
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| || | | ||||| || || || ||||| |||| || | |||||||| |||||
Sbjct 3420 AAAGTCCGCCCATCTTCCAGTTGCTTTCCAGCGAAGATTAGCCTCTGCTGATCTGGAGGG 3361
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|| ||||| ||||| |||||| || | | || | ||||||| | || |||
Sbjct 3360 ATACCTTCCTTGTCCTGGATTTTCGCCTTGACGTTGTCGATAGTGTCGGAGCTTTCGACC 3301
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| | || | ||||||||| |||| ||||| ||||| || |||||
Sbjct 3300 TCGAGCGTGATCGTCTTGCCAGTCAGGGTTTTGACGAAGATCTGCAT 3254
>seq181690
Length=5866
Score = 109 bits (120), Expect = 5e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
||||| | |||||||| ||| ||||||| || || || |||||||| || |||||
Sbjct 2963 CCGCCCCTTAAACGCAGAACCAAGTGAAGGGTCGATTCCTTTTGAATATTGTAATCCGCA 3022
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| |||||| |||||||| |||||| |||| || | |||||| || || ||
Sbjct 3023 AGGGTGCGTCCGTCTTCAAGCTGTTTTCCAGCAAAGATAAGCCTTTGCTGGTCTGGTGGG 3082
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCAC 139716
|| || || || || ||| | |||| ||| | | || || | || | ||||||
Sbjct 3083 ATCCCCTCCTTATCT-TGAATCTTTGCCTTAACGTTGTCAATGGTATCCGAACTCTCCAC 3141
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|||| ||| | ||||| || || | ||||| || ||||||||||||
Sbjct 3142 TTCAAGGGTTATGGTCTTCCCTGTGAGGGTTTTCACAAATATTTGCATA 3190
Score = 89.7 bits (98), Expect = 5e-13
Identities = 161/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GCT 139596
||||||| | ||| | ||| || |||| || ||||| ||||| || || ||||| |||
Sbjct 3191 CCGCCTCTGAGACGAAGAACCAAATGAAGGGTCGACTCCTTTTGGATATTGTAATCAGCT 3250
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| || ||| || || | |||||| || ||| |||| || | |||||| || || ||
Sbjct 3251 -AGGGTCCTCCCATCCTCCAACTGTTTCCCTGCAAAGATAAGCCTTTGCTGGTCTGGGGG 3309
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCA 139715
|| || || || || ||| | |||| ||| | | || || | || | |||||
Sbjct 3310 GATCCCCTCCTTATCT-TGAATCTTTGCCTTAACGTTGTCAATGGTATCCGAACTCTCCA 3368
Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|||||| ||| | ||||| || || | ||||| || ||||||||||||
Sbjct 3369 CCTCAAGGGTTATGGTCTTCCCTGTGAGGGTTTTCACAAATATTTGCATA 3418
>seq176217
Length=4970
Score = 93.3 bits (102), Expect = 4e-14
Identities = 148/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GCTCATTGTGCTCGAGTCTTC 139614
|| ||||| | || ||||| ||||| ||||| ||||| ||| | || ||| || ||
Sbjct 2310 ACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAATCCGCT-AGGGTCCTCCCATCCTC 2368
Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674
|| ||||| |||||| ||||||| | ||||| || || || || ||||| || ||
Sbjct 2369 CAGTTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATCCCTTCCTTATCTTG 2428
Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734
||| ||| || | | || | ||| |||| |||||||| | || | |||||
Sbjct 2429 GATCTTTGCCTTAACGTTATCAATTGTATCGGAACTTTCCACCTCCAAAGTGATGGTCTT 2488
Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||| | ||||| ||||||||||||||
Sbjct 2489 CCCGGTGAGAGTTTTCACGAATATTTGCAT 2518
>seq194317
Length=10706
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
||||| || | || | || | ||| | ||| || || || || ||||| || |||
Sbjct 1306 CCGCCGCGAAGGCGGAGGACGAGGTGGAGCGTGGATTCCTTCTGGATGTTGTAGTCGGCT 1365
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| || || ||| || ||||| || || || |||| || || || || || || |||
Sbjct 1366 AGAGTTCTTCCGTCCTCCAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGGTCTGGTGGT 1425
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|||||||||||||| ||| ||| ||| | | || | ||||| | || || |||
Sbjct 1426 ATGCCTTCTTTGTCCTGGATCTTTGCTTTGACATTGTCGATGGTGTCAGAGGATTCAACC 1485
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| | ||| | || || ||||| || ||||| ||||| || |||||
Sbjct 1486 TCTAGGGTTATGGTTTTCCCGGTTAAGGTTTTGACGAAGATCTGCAT 1532
>seq156113
Length=3066
Score = 86.0 bits (94), Expect = 6e-12
Identities = 140/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 139567 CGTAGACTCTTTTTGAATGTTATAAT-CGCTCATTGTGCTCGAGTCTTCGAGCTGTTTAC 139625
||| ||||| || || |||||||||| |||| | || | | ||||| | || ||||
Sbjct 1083 CGTCGACTCCTTCTGGATGTTATAATCCGCT-AGGGTTCGCCCATCTTCCAATTGCTTAC 1025
Query 139626 CAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTT 139685
|||| | |||| || |||||||| ||||| || ||||| ||||| |||||| |
Sbjct 1024 CAGCGAAAATCAACCGCTGCTGATCCGGAGGAATCCCTTCCTTGTCTTGGATTTTGGCCT 965
Query 139686 TTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745
||| | || | || |||| | ||| || || | ||| | || |||||||| | |
Sbjct 964 TTACATTGTCGATAGTATCGGAGCTCTCGACTTCCAAGGTGATTGTTTTGCCGGTTAGGG 905
Query 139746 TTTTTACGAATATTTGCAT 139764
|||| ||||| || |||||
Sbjct 904 TTTTGACGAAGATCTGCAT 886
>seq155647
Length=3035
Score = 86.0 bits (94), Expect = 6e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609
|||| || | ||||| ||| ||||| || || ||||| || ||| | || | |
Sbjct 2224 CGCAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTCCGACCG 2165
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
|| ||||||||||| ||||| |||| || |||||||| || || || |||||||| |||
Sbjct 2164 TCCTCGAGCTGTTTGCCAGCGAAGATGAGGCGTTGCTGGTCCGGTGGGATGCCTTCCTTG 2105
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
|| ||| || || | | || | ||||| | || || ||||| | || |
Sbjct 2104 TCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCCGAGGATTCAACCTCGAGAGTTATG 2045
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||| || || | ||||| ||||| || |||||
Sbjct 2044 GTCTTACCCGTTAGGGTTTTGACGAAGATCTGCAT 2010
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494822581237600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |