Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq194543 118 1e-21 seq181690 109 5e-19 seq176217 93.3 4e-14 seq194317 86.0 6e-12 seq156113 86.0 6e-12 seq155647 86.0 6e-12 >seq194543 Length=10949 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| |||| ||| | || | ||||| ||| |||||||| || ||||| |||||| Sbjct 3253 GCCGCCGCGTAGACGGAGGACGAGGTGAAGCGTGGACTCTTTCTGTATGTTGTAATCGGC 3194 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | ||| ||||||||||| |||||| |||| ||||| |||||||| ||||| Sbjct 3193 GAGCGTACGGCCGTCCTCGAGCTGTTTTCCAGCAAAGATTAGACGCTGCTGATCCGGAGG 3134 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || ||| ||| ||| | | || | || |||| | || || Sbjct 3133 GATTCCTTCCTTATCCTGGATCTTTGCTTTCACGTTGTCGATAGTATCGGAGCTTTCGAC 3074 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||| || || | ||||| ||||| || ||||| Sbjct 3073 CTCGAGGGTGATTGTCTTACCAGTTAGGGTTTTCACGAAGATCTGCAT 3026 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | |||| ||||| || || || || || |||||||||||| Sbjct 3480 CCGCCACGGAGACGGAGGACTAGGTGAAGAGTGGATTCCTTCTGGATGTTATAATCGGCT 3421 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | | ||||| || || || ||||| |||| || | |||||||| ||||| Sbjct 3420 AAAGTCCGCCCATCTTCCAGTTGCTTTCCAGCGAAGATTAGCCTCTGCTGATCTGGAGGG 3361 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| |||||| || | | || | ||||||| | || ||| Sbjct 3360 ATACCTTCCTTGTCCTGGATTTTCGCCTTGACGTTGTCGATAGTGTCGGAGCTTTCGACC 3301 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||||||| |||| ||||| ||||| || ||||| Sbjct 3300 TCGAGCGTGATCGTCTTGCCAGTCAGGGTTTTGACGAAGATCTGCAT 3254 >seq181690 Length=5866 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| | |||||||| ||| ||||||| || || || |||||||| || ||||| Sbjct 2963 CCGCCCCTTAAACGCAGAACCAAGTGAAGGGTCGATTCCTTTTGAATATTGTAATCCGCA 3022 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| |||||||| |||||| |||| || | |||||| || || || Sbjct 3023 AGGGTGCGTCCGTCTTCAAGCTGTTTTCCAGCAAAGATAAGCCTTTGCTGGTCTGGTGGG 3082 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCAC 139716 || || || || || ||| | |||| ||| | | || || | || | |||||| Sbjct 3083 ATCCCCTCCTTATCT-TGAATCTTTGCCTTAACGTTGTCAATGGTATCCGAACTCTCCAC 3141 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| ||| | ||||| || || | ||||| || |||||||||||| Sbjct 3142 TTCAAGGGTTATGGTCTTCCCTGTGAGGGTTTTCACAAATATTTGCATA 3190 Score = 89.7 bits (98), Expect = 5e-13 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GCT 139596 ||||||| | ||| | ||| || |||| || ||||| ||||| || || ||||| ||| Sbjct 3191 CCGCCTCTGAGACGAAGAACCAAATGAAGGGTCGACTCCTTTTGGATATTGTAATCAGCT 3250 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || ||| || || | |||||| || ||| |||| || | |||||| || || || Sbjct 3251 -AGGGTCCTCCCATCCTCCAACTGTTTCCCTGCAAAGATAAGCCTTTGCTGGTCTGGGGG 3309 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCA 139715 || || || || || ||| | |||| ||| | | || || | || | ||||| Sbjct 3310 GATCCCCTCCTTATCT-TGAATCTTTGCCTTAACGTTGTCAATGGTATCCGAACTCTCCA 3368 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||||| ||| | ||||| || || | ||||| || |||||||||||| Sbjct 3369 CCTCAAGGGTTATGGTCTTCCCTGTGAGGGTTTTCACAAATATTTGCATA 3418 >seq176217 Length=4970 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GCTCATTGTGCTCGAGTCTTC 139614 || ||||| | || ||||| ||||| ||||| ||||| ||| | || ||| || || Sbjct 2310 ACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAATCCGCT-AGGGTCCTCCCATCCTC 2368 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 || ||||| |||||| ||||||| | ||||| || || || || ||||| || || Sbjct 2369 CAGTTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATCCCTTCCTTATCTTG 2428 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| ||| || | | || | ||| |||| |||||||| | || | ||||| Sbjct 2429 GATCTTTGCCTTAACGTTATCAATTGTATCGGAACTTTCCACCTCCAAAGTGATGGTCTT 2488 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||||| |||||||||||||| Sbjct 2489 CCCGGTGAGAGTTTTCACGAATATTTGCAT 2518 >seq194317 Length=10706 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | || | || | ||| | ||| || || || || ||||| || ||| Sbjct 1306 CCGCCGCGAAGGCGGAGGACGAGGTGGAGCGTGGATTCCTTCTGGATGTTGTAGTCGGCT 1365 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||| || ||||| || || || |||| || || || || || || ||| Sbjct 1366 AGAGTTCTTCCGTCCTCCAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGGTCTGGTGGT 1425 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| ||| ||| ||| | | || | ||||| | || || ||| Sbjct 1426 ATGCCTTCTTTGTCCTGGATCTTTGCTTTGACATTGTCGATGGTGTCAGAGGATTCAACC 1485 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | || || ||||| || ||||| ||||| || ||||| Sbjct 1486 TCTAGGGTTATGGTTTTCCCGGTTAAGGTTTTGACGAAGATCTGCAT 1532 >seq156113 Length=3066 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 139567 CGTAGACTCTTTTTGAATGTTATAAT-CGCTCATTGTGCTCGAGTCTTCGAGCTGTTTAC 139625 ||| ||||| || || |||||||||| |||| | || | | ||||| | || |||| Sbjct 1083 CGTCGACTCCTTCTGGATGTTATAATCCGCT-AGGGTTCGCCCATCTTCCAATTGCTTAC 1025 Query 139626 CAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTT 139685 |||| | |||| || |||||||| ||||| || ||||| ||||| |||||| | Sbjct 1024 CAGCGAAAATCAACCGCTGCTGATCCGGAGGAATCCCTTCCTTGTCTTGGATTTTGGCCT 965 Query 139686 TTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 ||| | || | || |||| | ||| || || | ||| | || |||||||| | | Sbjct 964 TTACATTGTCGATAGTATCGGAGCTCTCGACTTCCAAGGTGATTGTTTTGCCGGTTAGGG 905 Query 139746 TTTTTACGAATATTTGCAT 139764 |||| ||||| || ||||| Sbjct 904 TTTTGACGAAGATCTGCAT 886 >seq155647 Length=3035 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||||| ||| ||||| || || ||||| || ||| | || | | Sbjct 2224 CGCAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTCCGACCG 2165 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || ||||||||||| ||||| |||| || |||||||| || || || |||||||| ||| Sbjct 2164 TCCTCGAGCTGTTTGCCAGCGAAGATGAGGCGTTGCTGGTCCGGTGGGATGCCTTCCTTG 2105 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||| | || || ||||| | || | Sbjct 2104 TCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCCGAGGATTCAACCTCGAGAGTTATG 2045 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || || | ||||| ||||| || ||||| Sbjct 2044 GTCTTACCCGTTAGGGTTTTGACGAAGATCTGCAT 2010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494822581237600