Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq197427 159 5e-34
seq181835 96.9 5e-15
seq190796 95.1 2e-14
seq180626 95.1 2e-14
>seq197427
Length=19924
Score = 159 bits (176), Expect = 5e-34
Identities = 586/911 (64%), Gaps = 15/911 (2%)
Strand=Plus/Plus
Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728
|| ||||| || || || | || |||||||| || || || || | ||| ||
Sbjct 13670 TTCTGGTACTCTCCAACCCTCTTCTCGAAAAAGTTTGTCTTCCCCTGCAAACTGATCAGC 13729
Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788
||||| ||||||||||||| | ||| || |||||| | | ||||| || | |
Sbjct 13730 TCCATCCAATCAAACGGATTCTTCGCATCGTACATTTTTCCATACCCCAAAGCACCCAAC 13789
Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848
| ||||| ||||| ||||| |||||| |||||| || | |||||| || | ||
Sbjct 13790 AGCCTATCAGCGACGAATTCAATATATTGGCTCATCAAATCGCCATTCATGCCCACCAGA 13849
Query 49849 TTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAA 49906
| || || || ||||| | ||| || || || |||||||| | | ||
Sbjct 13850 GCACACGGCAGCGCGTCGCAG--ACAAACTCCCTCTCGATCTCCACCGCATCGGCCACAA 13907
Query 49907 TAGATCTAACGGTTTCTTCACTCGGTGGATG---CAATAAATGTTTAAACATCAAACATG 49963
| || || || || ||| | || || || | | ||| ||| || |
Sbjct 13908 TTCCCCTGACTCGCTCCTCGCTCAGCTTCTGAGTCAGCAACTCGT---ACAGCAAGCAGG 13964
Query 49964 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGG 50023
| ||||||||||||| || |||||||| || | |||||||| || || | || |
Sbjct 13965 CAAAATCGCAGTGCAAGCCTTCGTCTCTTGAGATCAACTCGTTGGAGAAGGTCAACCCAG 14024
Query 50024 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA-CCCAGAAAAGAAGATT 50082
|||| | || |||||||| ||||| || || | |||| | | ||| || ||||| ||
Sbjct 14025 GCATCAACCCGCGCTTTTTGAGCCAGAAGATCG-CGCAGAAGCTCCCGGAGAAGAAAATC 14083
Query 50083 CCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCAC 50142
||||| || ||||||||||| | || ||| | || ||| | | ||||||
Sbjct 14084 CCTTCGACGCAAGCAAAGGCAACGATTCGCTCGGCGAAAGACTCGCCACCGTCGATCCAC 14143
Query 50143 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 50202
|| | ||||| | ||||||||||| || ||||| ||||| || || || | || ||
Sbjct 14144 TTGAGGGCCCACTTGGCCTTCTTTTCCACGCAAGGGATCGTCTCGATCGCGTGGAAAAGC 14203
Query 50203 TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 50262
|| || || ||| ||| || | || | |||| ||| || || |||||||| ||
Sbjct 14204 CGGTCCTTCTCGTTAGAATCCTTGATGTACGACTCGAGCAAGAGGCTGTACATTTCGGAG 14263
Query 50263 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACT 50322
|| ||||| || ||||| || || || ||||| || ||| ||||| | | ||| ||
Sbjct 14264 TGGATGTTCTCGATGGCGATTTGGAAGCCGTAAAAGGCTCTGGCCTCAGCTACCTGGACC 14323
Query 50323 TCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 50382
|| | || | | || | || || || || |||||| ||| || || ||
Sbjct 14324 TCCTTCATGAACCTGCCGGCCAGGTTCTCCAAGACGATACCGTCAGAGGCGGCGAAGAAG 14383
Query 50383 GCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAG---TTTATTCCAATCATTG 50439
|| | || || | || || ||| |||| | || || || | ||| | |
Sbjct 14384 GCGAGGACGTGGGTGATGAAGTGTCGCTCGTCGTCGGTCAGGGTTTCCTCCCAGTGGCGG 14443
Query 50440 ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 50499
| || || | ||| |||||||| | ||||| || || || ||||| || || |||
Sbjct 14444 AGGTCGGAGGAGAGATCGACTTCTTCAGCCGTCCAGAAGGAGGCTTCTGCTTTCTTGTAC 14503
Query 50500 ATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCA 50559
|| | |||||| | | || | |||||| || || || | || ||| ||||| |
Sbjct 14504 ATTTCCCAGATTTGTGGGTACTTGATTGGAAACATGCAGAAGCGATCTGGGTTTGGCGTC 14563
Query 50560 AGGATCGGTTC 50570
|||| |||||
Sbjct 14564 AGGAGGGGTTC 14574
>seq181835
Length=5898
Score = 96.9 bits (106), Expect = 5e-15
Identities = 122/168 (73%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 79836 TCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGG 79895
|||||| ||||| | || | | ||| || || || |||||| ||| |||| || ||
Sbjct 4032 TCTTTCATATTGGGCGTAAAGTTTTTCAAAATCTTCACCCCAACAATCAGCTAAGCCTGG 3973
Query 79896 ACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAG 79955
| || | ||||| | ||| ||||| || | || | | | |||| ||||||||| ||
Sbjct 3972 AGCCTCATTTGGACAAAACAAAGACCATTCCCTATTACCTTCAACTCTTTTCATAAAAAG 3913
Query 79956 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTC 80003
|||||| ||||||||||| ||||||||| |||| | |||||| ||
Sbjct 3912 ATCAGGTATCCAAAGAGCATAAAATAGATCCCTGGCCCGATGCTCTTC 3865
Score = 93.3 bits (102), Expect = 6e-14
Identities = 141/201 (70%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 80116 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCG 80175
|| |||| |||| |||| | | ||| |||| ||||||||||||||| ||||| || ||
Sbjct 3444 GCAGTGTCATTAAAAACACGTAGCATGGGAACAATACCATTGGATGTCCCATTTGTTCCA 3385
Query 80176 GAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATT 80235
||||||||| || | ||||| |||||| || || | ||| ||||| || ||
Sbjct 3384 CGGATATAGCTGCCTGTAGCACGTATATTATGAACAGAGACACCAATTCCTCCCGCTGAC 3325
Query 80236 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATC 80295
|| |||| ||| || || || || ||||| || || || || |||||||| ||
Sbjct 3324 TTGCTGATTGTTGCACACTCCTTCAAAGTTTCATATATTCCTTCAATACTATCATCTTTC 3265
Query 80296 ATGTTAAGTAGAAAACAGCTA 80316
||| | | ||| ||||||
Sbjct 3264 ATGCACACCAAAAAGCAGCTA 3244
>seq190796
Length=8466
Score = 95.1 bits (104), Expect = 2e-14
Identities = 79/97 (81%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019
|| || || |||||||||||||||||||||||| ||| ||||| || || || || |
Sbjct 3084 CAAGCAAAGTCGCAGTGCAGACCCTCGTCTCTAGAAATAAGTTCATTTGAGAATGTCAAG 3143
Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG 50056
|| ||||| || || | ||||||||||||||||||||
Sbjct 3144 CCTGGCATCAGTCCCCTCTTTTTAAGCCAAAATATGG 3180
>seq180626
Length=5659
Score = 95.1 bits (104), Expect = 2e-14
Identities = 154/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154
|| || ||||| | || | || |||| |||| |||||| | |||||||| | ||||
Sbjct 2941 CCCCCTTGATCAACATAACGGGCAGTGTCATTAAAAACTCGTAGCATTGGAACCACACCA 2882
Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214
|| ||||| ||||| || || |||||| || || |||||||||||||| || ||
Sbjct 2881 TTTGATGTCCCATTTGTTCCACGGATATAACTCCCTGTGGCACGAATATTATGAACAGAG 2822
Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274
| || ||||| || || || ||| | || || || || |||||||||||
Sbjct 2821 ACTCCGATTCCTCCAGCAGACTTGCTGATAACAGCACACTCCTTCAAAGTATCATAGATT 2762
Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316
|| || ||||| ||||| ||||| | | ||| ||||||
Sbjct 2761 CCTTCAATGCTGTCATCTTTCATGCACACCAAAAAGCAGCTA 2720
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716471305392920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |