Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq197427 159 5e-34 seq181835 96.9 5e-15 seq190796 95.1 2e-14 seq180626 95.1 2e-14 >seq197427 Length=19924 Score = 159 bits (176), Expect = 5e-34 Identities = 586/911 (64%), Gaps = 15/911 (2%) Strand=Plus/Plus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 || ||||| || || || | || |||||||| || || || || | ||| || Sbjct 13670 TTCTGGTACTCTCCAACCCTCTTCTCGAAAAAGTTTGTCTTCCCCTGCAAACTGATCAGC 13729 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 ||||| ||||||||||||| | ||| || |||||| | | ||||| || | | Sbjct 13730 TCCATCCAATCAAACGGATTCTTCGCATCGTACATTTTTCCATACCCCAAAGCACCCAAC 13789 Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848 | ||||| ||||| ||||| |||||| |||||| || | |||||| || | || Sbjct 13790 AGCCTATCAGCGACGAATTCAATATATTGGCTCATCAAATCGCCATTCATGCCCACCAGA 13849 Query 49849 TTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAA 49906 | || || || ||||| | ||| || || || |||||||| | | || Sbjct 13850 GCACACGGCAGCGCGTCGCAG--ACAAACTCCCTCTCGATCTCCACCGCATCGGCCACAA 13907 Query 49907 TAGATCTAACGGTTTCTTCACTCGGTGGATG---CAATAAATGTTTAAACATCAAACATG 49963 | || || || || ||| | || || || | | ||| ||| || | Sbjct 13908 TTCCCCTGACTCGCTCCTCGCTCAGCTTCTGAGTCAGCAACTCGT---ACAGCAAGCAGG 13964 Query 49964 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGG 50023 | ||||||||||||| || |||||||| || | |||||||| || || | || | Sbjct 13965 CAAAATCGCAGTGCAAGCCTTCGTCTCTTGAGATCAACTCGTTGGAGAAGGTCAACCCAG 14024 Query 50024 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA-CCCAGAAAAGAAGATT 50082 |||| | || |||||||| ||||| || || | |||| | | ||| || ||||| || Sbjct 14025 GCATCAACCCGCGCTTTTTGAGCCAGAAGATCG-CGCAGAAGCTCCCGGAGAAGAAAATC 14083 Query 50083 CCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCAC 50142 ||||| || ||||||||||| | || ||| | || ||| | | |||||| Sbjct 14084 CCTTCGACGCAAGCAAAGGCAACGATTCGCTCGGCGAAAGACTCGCCACCGTCGATCCAC 14143 Query 50143 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 50202 || | ||||| | ||||||||||| || ||||| ||||| || || || | || || Sbjct 14144 TTGAGGGCCCACTTGGCCTTCTTTTCCACGCAAGGGATCGTCTCGATCGCGTGGAAAAGC 14203 Query 50203 TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 50262 || || || ||| ||| || | || | |||| ||| || || |||||||| || Sbjct 14204 CGGTCCTTCTCGTTAGAATCCTTGATGTACGACTCGAGCAAGAGGCTGTACATTTCGGAG 14263 Query 50263 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACT 50322 || ||||| || ||||| || || || ||||| || ||| ||||| | | ||| || Sbjct 14264 TGGATGTTCTCGATGGCGATTTGGAAGCCGTAAAAGGCTCTGGCCTCAGCTACCTGGACC 14323 Query 50323 TCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 50382 || | || | | || | || || || || |||||| ||| || || || Sbjct 14324 TCCTTCATGAACCTGCCGGCCAGGTTCTCCAAGACGATACCGTCAGAGGCGGCGAAGAAG 14383 Query 50383 GCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAG---TTTATTCCAATCATTG 50439 || | || || | || || ||| |||| | || || || | ||| | | Sbjct 14384 GCGAGGACGTGGGTGATGAAGTGTCGCTCGTCGTCGGTCAGGGTTTCCTCCCAGTGGCGG 14443 Query 50440 ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 50499 | || || | ||| |||||||| | ||||| || || || ||||| || || ||| Sbjct 14444 AGGTCGGAGGAGAGATCGACTTCTTCAGCCGTCCAGAAGGAGGCTTCTGCTTTCTTGTAC 14503 Query 50500 ATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCA 50559 || | |||||| | | || | |||||| || || || | || ||| ||||| | Sbjct 14504 ATTTCCCAGATTTGTGGGTACTTGATTGGAAACATGCAGAAGCGATCTGGGTTTGGCGTC 14563 Query 50560 AGGATCGGTTC 50570 |||| ||||| Sbjct 14564 AGGAGGGGTTC 14574 >seq181835 Length=5898 Score = 96.9 bits (106), Expect = 5e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 79836 TCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGG 79895 |||||| ||||| | || | | ||| || || || |||||| ||| |||| || || Sbjct 4032 TCTTTCATATTGGGCGTAAAGTTTTTCAAAATCTTCACCCCAACAATCAGCTAAGCCTGG 3973 Query 79896 ACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAG 79955 | || | ||||| | ||| ||||| || | || | | | |||| ||||||||| || Sbjct 3972 AGCCTCATTTGGACAAAACAAAGACCATTCCCTATTACCTTCAACTCTTTTCATAAAAAG 3913 Query 79956 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTC 80003 |||||| ||||||||||| ||||||||| |||| | |||||| || Sbjct 3912 ATCAGGTATCCAAAGAGCATAAAATAGATCCCTGGCCCGATGCTCTTC 3865 Score = 93.3 bits (102), Expect = 6e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 80116 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCG 80175 || |||| |||| |||| | | ||| |||| ||||||||||||||| ||||| || || Sbjct 3444 GCAGTGTCATTAAAAACACGTAGCATGGGAACAATACCATTGGATGTCCCATTTGTTCCA 3385 Query 80176 GAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATT 80235 ||||||||| || | ||||| |||||| || || | ||| ||||| || || Sbjct 3384 CGGATATAGCTGCCTGTAGCACGTATATTATGAACAGAGACACCAATTCCTCCCGCTGAC 3325 Query 80236 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATC 80295 || |||| ||| || || || || ||||| || || || || |||||||| || Sbjct 3324 TTGCTGATTGTTGCACACTCCTTCAAAGTTTCATATATTCCTTCAATACTATCATCTTTC 3265 Query 80296 ATGTTAAGTAGAAAACAGCTA 80316 ||| | | ||| |||||| Sbjct 3264 ATGCACACCAAAAAGCAGCTA 3244 >seq190796 Length=8466 Score = 95.1 bits (104), Expect = 2e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || |||||||||||||||||||||||| ||| ||||| || || || || | Sbjct 3084 CAAGCAAAGTCGCAGTGCAGACCCTCGTCTCTAGAAATAAGTTCATTTGAGAATGTCAAG 3143 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG 50056 || ||||| || || | |||||||||||||||||||| Sbjct 3144 CCTGGCATCAGTCCCCTCTTTTTAAGCCAAAATATGG 3180 >seq180626 Length=5659 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 || || ||||| | || | || |||| |||| |||||| | |||||||| | |||| Sbjct 2941 CCCCCTTGATCAACATAACGGGCAGTGTCATTAAAAACTCGTAGCATTGGAACCACACCA 2882 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 || ||||| ||||| || || |||||| || || |||||||||||||| || || Sbjct 2881 TTTGATGTCCCATTTGTTCCACGGATATAACTCCCTGTGGCACGAATATTATGAACAGAG 2822 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | || ||||| || || || ||| | || || || || ||||||||||| Sbjct 2821 ACTCCGATTCCTCCAGCAGACTTGCTGATAACAGCACACTCCTTCAAAGTATCATAGATT 2762 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 || || ||||| ||||| ||||| | | ||| |||||| Sbjct 2761 CCTTCAATGCTGTCATCTTTCATGCACACCAAAAAGCAGCTA 2720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716471305392920