Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq176217 104 2e-17 seq188192 82.4 6e-11 >seq176217 Length=4970 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||||||||||| ||| |||||||| | ||||||||||| | ||||| |||| || Sbjct 2537 CACCAAATGGAGGGTGGATTCCTTTTGGATATTGTAATCGGCAAGGGTACGGCCGTCCTC 2596 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 | ||| |||||||||||||| | | || || || | || | ||||| || || Sbjct 2597 GAGTTGCTTGCCGGCAAAAATAAGCCTTTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTG 2656 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTT 43078 |||| ||||||| | ||| |||||| ||| ||||| |||| || || |||| Sbjct 2657 GATCTTAGCTTTGACGTTATCAATTGTGTC-AGAGCTTTCGACCTCTAAAGTGATGGTTT 2715 Query 43079 TTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || || ||||| || |||||||| Sbjct 2716 TTCCTGTCAGGGTCTTCACGAATATTTGCAT 2746 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||||||||| | |||| |||||||| | || || |||| | || || |||| || Sbjct 1853 CACCAAATGAAGAGTGGATTCCTTTTGGATGTTATAGTCGGCAAGGGTGCGGCCGTCCTC 1912 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 || || ||||| || || ||||| | ||| ||||| | || | || || || || Sbjct 1913 CAGCTGCTTGCCTGCGAAGATCAACCTCTGCTGATCCGGTGGAATCCCCTCCTTATCTTG 1972 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 |||| | | ||||| | ||| ||| ||| | ||| || || | |||||||| || Sbjct 1973 GATCTTCGCCTTGACATTATCAATTGTATCGGAACTCTCAACCTCCAAGGTTATAGTCTT 2032 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 ||||| | || ||||||||||| |||||| Sbjct 2033 CCCGGTCAATGTCTTCACAAAAATCTGCATT 2063 >seq188192 Length=7493 Score = 82.4 bits (90), Expect = 6e-11 Identities = 97/130 (75%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 42892 AGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGT 42951 ||||| || |||| ||| | || |||||| || | ||||| || | | || || Sbjct 4799 AGTCTCAAAACCAGATGAAGTGTTGACTCCTTCTGGATGTTGTAGTCTGCTAGAGTTCGG 4858 Query 42952 TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCT 43011 | || |||||||||||||| ||||||||||||| ||||||||| | ||| | |||||| Sbjct 4859 CCATCTTCCAATTGTTTGCCAGCAAAAATCAATCTCTGTTGATCCGGCGGGATACCTTCC 4918 Query 43012 TTTTCGCTGA 43021 || || |||| Sbjct 4919 TTGTC-CTGA 4927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380439068067774