Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq197427 167 3e-36 seq181835 100 4e-16 >seq197427 Length=19924 Score = 167 bits (184), Expect = 3e-36 Identities = 591/914 (65%), Gaps = 21/914 (2%) Strand=Plus/Plus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 || ||||| || || || | || |||||||| || ||||| || | ||| || Sbjct 13670 TTCTGGTACTCTCCAACCCTCTTCTCGAAAAAGTTTGTCTTCCCCTGCAAACTGATCAGC 13729 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 ||||| ||||||||||||| | ||| || |||||| | | ||||| || | | Sbjct 13730 TCCATCCAATCAAACGGATTCTTCGCATCGTACATTTTTCCATACCCCAAAGCACCCAAC 13789 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953 | ||||| |||| |||||| |||||| |||||| || | |||||| || | || Sbjct 13790 AGCCTATCAGCGACGAATTCAATATATTGGCTCATCAAATCGCCATTCATGCCCACCAGA 13849 Query 41954 TTAACTGGAAGAGC--CACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 42011 | || || || | ||| | ||| || || || ||||| || | | || Sbjct 13850 GCACACGGCAGCGCGTCGCAG--ACAAACTCCCTCTCGATCTCCACCGCATCGGCCACAA 13907 Query 42012 TAGATCTTACTGTTTCTTCACTCGGTG---GATACAATAAATGTTTAAACATCAAACATG 42068 | || ||| || || ||| | || || || | | ||| ||| || | Sbjct 13908 TTCCCCTGACTCGCTCCTCGCTCAGCTTCTGAGTCAGCAACTCGT---ACAGCAAGCAGG 13964 Query 42069 CGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 42128 | ||||||||||||| || || ||||| || || |||||||| || || | || | Sbjct 13965 CAAAATCGCAGTGCAAGCCTTCGTCTCTTGAGATCAACTCGTTGGAGAAGGTCAACCCAG 14024 Query 42129 GCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAA-AAGAAGATT 42187 |||| | || |||||||| ||||| || || | |||| | | ||| | | ||||| || Sbjct 14025 GCATCAACCCGCGCTTTTTGAGCCAGAAGATCG-CGCAGAAGCTCCCGGAGAAGAAAATC 14083 Query 42188 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCATGTATC 42244 ||||| || |||||||||| | || ||| | || || ||| ||| ||| Sbjct 14084 CCTTCGACGCAAGCAAAGGCAACGATTCGCTCGGCGAAAGACTCGCCACCGTCG---ATC 14140 Query 42245 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 42304 ||||| | ||||| | ||||||||||| || ||||| ||||| || || || | || Sbjct 14141 CACTTGAGGGCCCACTTGGCCTTCTTTTCCACGCAAGGGATCGTCTCGATCGCGTGGAAA 14200 Query 42305 AGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCT 42364 || || || || ||| ||| || | || | |||| ||| || || |||||||| Sbjct 14201 AGCCGGTCCTTCTCGTTAGAATCCTTGATGTACGACTCGAGCAAGAGGCTGTACATTTCG 14260 Query 42365 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGT 42424 || || ||||| || ||||| || || || ||||| || ||||||||| | ||||| Sbjct 14261 GAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAAAAGGCTCTGGCCTCAGCTACCTGG 14320 Query 42425 ACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAA 42484 || || | || | | || | || || || || |||||| ||| || || Sbjct 14321 ACCTCCTTCATGAACCTGCCGGCCAGGTTCTCCAAGACGATACCGTCAGAGGCGGCGAAG 14380 Query 42485 AACGCCAATACATGTTTTATAAAATATTTTTCGTC--CGGTGTTAATTT-ATTCCAATCA 42541 || || | || || | || || | | ||||| |||| ||| | ||| | Sbjct 14381 AAGGCGAGGACGTGGGTGATGAAGTGTCGCTCGTCGTCGGTCAGGGTTTCCTCCCAGTGG 14440 Query 42542 TTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTA 42601 || || || | ||| |||||||| ||||||| || || |||||||| || || Sbjct 14441 CGGAGGTCGGAGGAGAGATCGACTTCTTCAGCCGTCCAGAAGGAGGCTTCTGCTTTCTTG 14500 Query 42602 TACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGGT 42661 ||||| | |||||| | | || | ||||| || || || | || ||| ||||| Sbjct 14501 TACATTTCCCAGATTTGTGGGTACTTGATTGGAAACATGCAGAAGCGATCTGGGTTTGGC 14560 Query 42662 GCAAGGATCGGTTC 42675 | |||| ||||| Sbjct 14561 GTCAGGAGGGGTTC 14574 >seq181835 Length=5898 Score = 100 bits (110), Expect = 4e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 71919 TCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGG 71978 |||||| ||||| | || | | ||| || || || |||||| || |||| || || Sbjct 4032 TCTTTCATATTGGGCGTAAAGTTTTTCAAAATCTTCACCCCAACAATCAGCTAAGCCTGG 3973 Query 71979 ACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAG 72038 | ||||| ||||| | ||| ||||| || | || | | | |||| ||||||||| || Sbjct 3972 AGCCTCATTTGGACAAAACAAAGACCATTCCCTATTACCTTCAACTCTTTTCATAAAAAG 3913 Query 72039 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTC 72086 |||||| ||||||||||| ||||||||| |||| | |||||| || Sbjct 3912 ATCAGGTATCCAAAGAGCATAAAATAGATCCCTGGCCCGATGCTCTTC 3865 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 72199 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCG 72258 || |||| |||| |||| | | ||| |||| |||||||||||||| ||||| || || Sbjct 3444 GCAGTGTCATTAAAAACACGTAGCATGGGAACAATACCATTGGATGTCCCATTTGTTCCA 3385 Query 72259 GAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATT 72318 ||||||||| || | ||||| ||||| || || | ||| ||||| || || Sbjct 3384 CGGATATAGCTGCCTGTAGCACGTATATTATGAACAGAGACACCAATTCCTCCCGCTGAC 3325 Query 72319 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 72378 || |||| ||| || || || || ||||| || || || ||||||||||| || Sbjct 3324 TTGCTGATTGTTGCACACTCCTTCAAAGTTTCATATATTCCTTCAATACTATCATCTTTC 3265 Query 72379 ATGTTAAGTAGAAAACAGCTA 72399 ||| | | ||| |||||| Sbjct 3264 ATGCACACCAAAAAGCAGCTA 3244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 669459648984280