Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq194543 91.5 1e-13 seq181690 91.5 1e-13 seq176217 82.4 8e-11 >seq194543 Length=10949 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || |||| ||| | || | |||| || || ||||| ||||||||||||||| Sbjct 3253 GCCGCCGCGTAGACGGAGGACGAGGTGAAGCGTGGACTCTTTCTGTATGTTGTAATCGGC 3194 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | ||| ||||| ||||| |||||| |||| ||||| |||||||| ||||| Sbjct 3193 GAGCGTACGGCCGTCCTCGAGCTGTTTTCCAGCAAAGATTAGACGCTGCTGATCCGGAGG 3134 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| || || || ||| ||| | | || | || || | | ||| || Sbjct 3133 GATTCCTTCCTTATCCTGGATCTTTGCTTTCACGTTGTCGATAGTATCGGAGCTTTCGAC 3074 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || || | ||||| ||||| || ||||| Sbjct 3073 CTCGAGGGTGATTGTCTTACCAGTTAGGGTTTTCACGAAGATCTGCAT 3026 >seq181690 Length=5866 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || | |||||||| ||| || |||| || ||||| ||||| || |||||||| Sbjct 2963 CCGCCCCTTAAACGCAGAACCAAGTGAAGGGTCGATTCCTTTTGAATATTGTAATCCGCA 3022 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||| || ||||| |||||| |||| || | |||||| || || || Sbjct 3023 AGGGTGCGTCCGTCTTCAAGCTGTTTTCCAGCAAAGATAAGCCTTTGCTGGTCTGGTGGG 3082 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || || || ||| ||| || | | || | || |||| || ||| Sbjct 3083 ATCCCCTCCTTATCTTGAATCTTTGCCTTAACGTTGTCAATGGTATCCGAACTCTCCACT 3142 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| || | ||||| || || | ||||| || |||||||||||| Sbjct 3143 TCAAGGGTTATGGTCTTCCCTGTGAGGGTTTTCACAAATATTTGCATA 3190 >seq176217 Length=4970 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAAT-CGC 143015 |||||| | | ||| | || || || | || || || ||||| |||||||||| ||| Sbjct 2291 GCCTCCCCTCAGACGAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAATCCGC 2350 Query 143016 TCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | | || ||| || || |||||||| |||||| ||||||| | ||||| || || | Sbjct 2351 T-AGGGTCCTCCCATCCTCCAGTTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCCGGGG 2409 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || ||||| || || || ||| || | | || | || || | ||| | Sbjct 2410 GAATCCCTTCCTTATCTTGGATCTTTGCCTTAACGTTATCAATTGTATCGGAACTTTCCA 2469 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || | ||| | ||||| ||||| | ||||| |||||||||||||| Sbjct 2470 CCTCCAAAGTGATGGTCTTCCCGGTGAGAGTTTTCACGAATATTTGCAT 2518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505745577450960