Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq197427 150 3e-31
>seq197427
Length=19924
Score = 150 bits (166), Expect = 3e-31
Identities = 591/907 (65%), Gaps = 48/907 (5%)
Strand=Plus/Minus
Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055
||||||| |||| ||| | | || |||||||||||||| || || | |||||||| |
Sbjct 14537 TGTTTCCAATCAAGTACCCACAAATCTGGGAAATGTACAAGAAAGCAGAAGCCTCCTTCT 14478
Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAG---ACTCGTTTGA 125112
|||||| ||||| |||||||| ||| ||||| | | |||||| || | |||
Sbjct 14477 GGACGGCTGAAGAAGTCGATCTCTCCTCCGACCTCCGCCACTGGGAGGAAACCC---TGA 14421
Query 125113 CTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAA 125172
| || |||||| | || || | ||| | | |||||||| |||| ||| || || |
Sbjct 14420 CCGACGACGAGCGACACTTCATCACCCACGTCCTCGCCTTCTTCGCCGCCTCTGACGGTA 14361
Query 125173 TCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGT 125229
||||| || || || | | || | ||| | ||| | | ||| | | ||||
Sbjct 14360 TCGTCTTGGAGAACCTGGCCGGCA-GGTTC-ATGAAG-GAGGTCCAGGTAGCTGAGGCCA 14304
Query 125230 CGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTA----CTCT 125285
||||||||| ||||||||| || |||||| | ||||| |||||||| ||||
Sbjct 14303 GAGCCTTTTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACAGCCTCT 14244
Query 125286 ACACTGATTGACATGTACATTCGCGATCCGCAACG-TAAACACATGCTCTTTAACGCAAT 125344
|| | || |||||| ||| | |||| || || ||| || |||| ||
Sbjct 14243 ----TGCTCGAGTCGTACATCAAGGATTC-TAACGAGAAGGACCGGCTTTTCCACGCGAT 14189
Query 125345 CGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGA 125404
||| ||| | || | | || ||||| | |||| | ||||||||| | |
Sbjct 14188 CGAGACGATCCCTTGCGTGGAAAAGAAGGCCAAGTGGGCCCTCAAGTGGATCGACGGTGG 14129
Query 125405 CAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTC 125464
| ||||| | |||||| || | || || || || ||| || || || ||||| ||
Sbjct 14128 CGAGTCT---TTCGCCGAGCGAATCGTTGCCTTTGCTTGCGTCGAAGGGATTTTCTTCTC 14072
Query 125465 GGGTAG-TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGC 125523
|| || || ||| || ||||| |||||||| |||||||| | ||||| || ||||
Sbjct 14071 CGGGAGCTTCTGC-GCGATCTTCTGGCTCAAAAAGCGCGGGTTGATGCCTGGGTTGACCT 14013
Query 125524 ACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT 125583
| |||||||| || || ||||||| ||| | ||||| || |||||| | ||||
Sbjct 14012 TCTCCAACGAGTTGATCTCAAGAGACGAAGGCTTGCACTGCGATTTTGCCTGCTTGCTGT 13953
Query 125584 TTCGCAACTATCTGCGTCCCGAGTGCAGATCC--AGCGATGAAAAGGTCATCAACATTGT 125641
|| | || | || | |||| | ||||| || |||| |||||
Sbjct 13952 ------ACGAGTTG----CTGACT-CAGAAGCTGAGCGAGGAGCGAGTCAGGGGAATTGT 13904
Query 125642 AACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGC-ATGA 125700
||||||| ||| ||| || |||||| | ||| | || || || || ||
Sbjct 13903 GGCCGATGCGGTGGAGATCGAGAGGGAGTTTGTCTGCGACGCGCTGCC-GTGTGCTCTGG 13845
Query 125701 TTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGT 125760
| |||||||| || | | ||| || | || || || || || || ||| | || ||
Sbjct 13844 TGGGCATGAATGGCGATTTGATGAGCCAATATATTGAATTCGTCGCTGATAGGCTGTTGG 13785
Query 125761 ACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCA 125820
| ||| | || || ||| | || |||||||| ||||||| ||| |||
Sbjct 13784 GTGCTTTGGGGTATGGAAAAATGTACGATGCGAAGAATCCGTTTGATTGGATG--GAGCT 13727
Query 125821 TATCA--CTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC--AAACGC 125876
|||| | |||| ||||| |||||||||||||||| ||| | |||||| || ||
Sbjct 13726 GATCAGTTTGCAGGGGAAGACAAACTTTTTCGAGAAGAGGGTTGGAGAGTACCAGAAGGC 13667
Query 125877 TACGGTG 125883
| |||||
Sbjct 13666 TTCGGTG 13660
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 739204671562280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |