Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq197427 150 3e-31 >seq197427 Length=19924 Score = 150 bits (166), Expect = 3e-31 Identities = 591/907 (65%), Gaps = 48/907 (5%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 ||||||| |||| ||| | | || |||||||||||||| || || | |||||||| | Sbjct 14537 TGTTTCCAATCAAGTACCCACAAATCTGGGAAATGTACAAGAAAGCAGAAGCCTCCTTCT 14478 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAG---ACTCGTTTGA 125112 |||||| ||||| |||||||| ||| ||||| | | |||||| || | ||| Sbjct 14477 GGACGGCTGAAGAAGTCGATCTCTCCTCCGACCTCCGCCACTGGGAGGAAACCC---TGA 14421 Query 125113 CTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAA 125172 | || |||||| | || || | ||| | | |||||||| |||| ||| || || | Sbjct 14420 CCGACGACGAGCGACACTTCATCACCCACGTCCTCGCCTTCTTCGCCGCCTCTGACGGTA 14361 Query 125173 TCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGT 125229 ||||| || || || | | || | ||| | ||| | | ||| | | |||| Sbjct 14360 TCGTCTTGGAGAACCTGGCCGGCA-GGTTC-ATGAAG-GAGGTCCAGGTAGCTGAGGCCA 14304 Query 125230 CGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTA----CTCT 125285 ||||||||| ||||||||| || |||||| | ||||| |||||||| |||| Sbjct 14303 GAGCCTTTTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACAGCCTCT 14244 Query 125286 ACACTGATTGACATGTACATTCGCGATCCGCAACG-TAAACACATGCTCTTTAACGCAAT 125344 || | || |||||| ||| | |||| || || ||| || |||| || Sbjct 14243 ----TGCTCGAGTCGTACATCAAGGATTC-TAACGAGAAGGACCGGCTTTTCCACGCGAT 14189 Query 125345 CGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGA 125404 ||| ||| | || | | || ||||| | |||| | ||||||||| | | Sbjct 14188 CGAGACGATCCCTTGCGTGGAAAAGAAGGCCAAGTGGGCCCTCAAGTGGATCGACGGTGG 14129 Query 125405 CAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTC 125464 | ||||| | |||||| || | || || || || ||| || || || ||||| || Sbjct 14128 CGAGTCT---TTCGCCGAGCGAATCGTTGCCTTTGCTTGCGTCGAAGGGATTTTCTTCTC 14072 Query 125465 GGGTAG-TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGC 125523 || || || ||| || ||||| |||||||| |||||||| | ||||| || |||| Sbjct 14071 CGGGAGCTTCTGC-GCGATCTTCTGGCTCAAAAAGCGCGGGTTGATGCCTGGGTTGACCT 14013 Query 125524 ACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT 125583 | |||||||| || || ||||||| ||| | ||||| || |||||| | |||| Sbjct 14012 TCTCCAACGAGTTGATCTCAAGAGACGAAGGCTTGCACTGCGATTTTGCCTGCTTGCTGT 13953 Query 125584 TTCGCAACTATCTGCGTCCCGAGTGCAGATCC--AGCGATGAAAAGGTCATCAACATTGT 125641 || | || | || | |||| | ||||| || |||| ||||| Sbjct 13952 ------ACGAGTTG----CTGACT-CAGAAGCTGAGCGAGGAGCGAGTCAGGGGAATTGT 13904 Query 125642 AACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGC-ATGA 125700 ||||||| ||| ||| || |||||| | ||| | || || || || || Sbjct 13903 GGCCGATGCGGTGGAGATCGAGAGGGAGTTTGTCTGCGACGCGCTGCC-GTGTGCTCTGG 13845 Query 125701 TTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGT 125760 | |||||||| || | | ||| || | || || || || || || ||| | || || Sbjct 13844 TGGGCATGAATGGCGATTTGATGAGCCAATATATTGAATTCGTCGCTGATAGGCTGTTGG 13785 Query 125761 ACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCA 125820 | ||| | || || ||| | || |||||||| ||||||| ||| ||| Sbjct 13784 GTGCTTTGGGGTATGGAAAAATGTACGATGCGAAGAATCCGTTTGATTGGATG--GAGCT 13727 Query 125821 TATCA--CTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC--AAACGC 125876 |||| | |||| ||||| |||||||||||||||| ||| | |||||| || || Sbjct 13726 GATCAGTTTGCAGGGGAAGACAAACTTTTTCGAGAAGAGGGTTGGAGAGTACCAGAAGGC 13667 Query 125877 TACGGTG 125883 | ||||| Sbjct 13666 TTCGGTG 13660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739204671562280