Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq162333 107 1e-18
seq194317 96.9 3e-15
seq181690 96.9 3e-15
seq176217 96.9 3e-15
seq160375 96.9 3e-15
seq101090 95.1 9e-15
seq93507 93.3 3e-14
seq188063 91.5 1e-13
seq194543 84.2 2e-11
seq155647 82.4 6e-11
>seq162333
Length=3517
Score = 107 bits (118), Expect = 1e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||| || | || |||||||||||||||||||| || ||||| |||||||| ||
Sbjct 3155 CCACCCCTGAGCCTCAAAACTAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCA 3096
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
||| | | | ||||||||||||||||||||| | ||||| | ||||| || ||||
Sbjct 3095 AGAGTCCGACCATCTTCTAATTGTTTGCCAGCGAAAATCAATCTCTGTTGATCAGGTGGA 3036
Query 15257 ATTCCTTCTTTGTC 15270
|| ||||| |||||
Sbjct 3035 ATGCCTTCCTTGTC 3022
>seq194317
Length=10706
Score = 96.9 bits (106), Expect = 3e-15
Identities = 147/207 (71%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220
|| || ||||| || || || |||||||| ||| |||| |||| |||| || | ||
Sbjct 1330 TGGAGCGTGGATTCCTTCTGGATGTTGTAGTCGGCTAGAGTTCTTCCGTCCTCCAGCTGC 1389
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279
||||| ||| | || | || |||||||| ||| || ||||||||||| || |||
Sbjct 1390 TTGCCGGCGAAGATAAGGCGCTGTTGGTCTGGTGGTATGCCTTCTTTGTCCTGGATCTTT 1449
Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339
||| || ||| | || ||||| || ||| || |||| ||| |||||||| || ||
Sbjct 1450 GCT-TTGACATTGTCGATGGTGTCAGAGGATTCAACCTCTAGGGTTATGGTTTTCCCGGT 1508
Query 15340 CAGAGTTTTTACAAAAATTTGCATATT 15366
| ||||| || || || ||||| ||
Sbjct 1509 TAAGGTTTTGACGAAGATCTGCATCTT 1535
>seq181690
Length=5866
Score = 96.9 bits (106), Expect = 3e-15
Identities = 150/212 (71%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213
||| ||||||||||| || || ||||| || |||||||| ||| | ||| | || ||
Sbjct 3208 AACCAAATGAAGGGTCGACTCCTTTTGGATATTGTAATCAGCTAGGGTCCTCCCATCCTC 3267
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
|| ||||| || || | || | | ||| ||||| || || || || || ||
Sbjct 3268 CAACTGTTTCCCTGCAAAGATAAGCCTTTGCTGGTCTGGGGGGATCCCCTCCTTATCTTG 3327
Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332
||| ||||| ||| || | || |||||||| | | || || || | ||| ||||| |
Sbjct 3328 AATCTTTGC-CTTAACGTTGTCAATGGTATCCGAACTCTCCACCTCAAGGGTTATGGTCT 3386
Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
| ||||| || ||||| ||||| |||||||||
Sbjct 3387 TCCCTGTGAGGGTTTTCACAAATATTTGCATA 3418
>seq176217
Length=4970
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || || ||||| || || ||||| ||||||||||| ||| | ||| | || ||
Sbjct 2310 ACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAATCCGCTAGGGTCCTCCCATCCTCC 2369
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| |||||| ||||| | |||| | || ||||| ||||| ||||| || ||
Sbjct 2370 AGTTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATCCCTTCCTTATCTTGG 2429
Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
|| ||||| ||| || | || || |||||| | |||| || || || || ||||| ||
Sbjct 2430 ATCTTTGC-CTTAACGTTATCAATTGTATCGGAACTTTCCACCTCCAAAGTGATGGTCTT 2488
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || |||||||| || || ||||||||
Sbjct 2489 CCCGGTGAGAGTTTTCACGAATATTTGCAT 2518
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194
|||||||||| | | | || ||||| |||||||| || ||||| || |||||||||
Sbjct 2518 TGCCACCTCTGAGACGGAGCACCAAATGGAGGGTGGATTCCTTTTGGATATTGTAATCGG 2577
Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254
|| | | |||| || | ||| ||||| || | || | | ||| ||||| |
Sbjct 2578 CAAGGGTACGGCCGTCCTCGAGTTGCTTGCCGGCAAAAATAAGCCTTTGCTGGTCTGGGG 2637
Query 15255 GAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313
|||||||||| ||||| || || ||| || || | || || || || ||||
Sbjct 2638 GAATTCCTTCCTTGTCCTGGATCTTAGCT-TTGACGTTATCAATTGTGTCAGAGCTTTCG 2696
Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| ||||| || |||||||| |||||||| || || || || ||||||||
Sbjct 2697 ACCTCTAAAGTGATGGTTTTTCCTGTCAGGGTCTTCACGAATATTTGCAT 2746
Score = 84.2 bits (92), Expect = 2e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || |||||||| || || ||||| |||||||||||| || | | | || ||
Sbjct 2766 ACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAATCGGCAAGGGTACGGCCATCCTCG 2825
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| ||| ||||| || | || | | ||| ||||| ||||||||||| |||||
Sbjct 2826 AGTTGCTTGCCGGCAAAGATAAGCCTTTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 2885
Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
|| || ||| || || | || || || || |||| || || || || ||||||||
Sbjct 2886 ATCTTAGCT-TTGACGTTATCAATAGTGTCAGAGCTTTCGACCTCCAAAGTGATGGTTTT 2944
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|||||||| ||||| || || || |||||
Sbjct 2945 TCCTGTCAGGGTTTTCACGAAGATCTGCAT 2974
>seq160375
Length=3367
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCGCGTCTTC 15213
|| || ||||||||||| || || || ||||||||||| || || | | |||| ||
Sbjct 1172 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCCAAG-GTACGGCCGTCCTC 1230
Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273
||||| || |||||| | || | | || ||||| ||| ||||| || |||||
Sbjct 1231 CAATTGCTTTCCAGCGAAAATAAGCCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTG 1290
Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
|||||| ||| || | || ||||| ||| |||| || || ||||| ||||| ||
Sbjct 1291 AATTTTAGCCTTCACGTTATCAATGGTGTCGGAGCTTTCCACCTCCAAGGTGATGGTCTT 1350
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || || ||||| ||||| || |||||
Sbjct 1351 GCCGGTGAGGGTTTTCACAAAGATCTGCAT 1380
>seq101090
Length=1060
Score = 95.1 bits (104), Expect = 9e-15
Identities = 94/122 (77%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCG 15208
|| ||||||||||||||||| || || ||||| |||||||| || ||| | | |
Sbjct 185 CTCAAAACTAAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTCCGCAAGAGTCCGACCA 244
Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268
||||| ||||||||||||||| | ||||| | |||| | || |||||| ||||| |||
Sbjct 245 TCTTCCAATTGTTTGCCAGCGAAAATCAATCTTTGTGGATCAGGTGGAATGCCTTCCTTG 304
Query 15269 TC 15270
||
Sbjct 305 TC 306
>seq93507
Length=917
Score = 93.3 bits (102), Expect = 3e-14
Identities = 160/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194
|||||||||| | | | || ||||| |||||||| || ||||| ||||||||||||
Sbjct 603 TGCCACCTCTGAGACGAAGGACCAAATGGAGGGTGGATTCCTTTTGGATGTTGTAATCGG 662
Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254
|| | | |||| || | ||| || || ||| | || | | ||| ||||| ||
Sbjct 663 CAAGGGTACGGCCGTCCTCAAGTTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTG 722
Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATC-GCTATTTTCT 15313
|||| ||||| ||||| || || || || | || |||||||| | ||||||
Sbjct 723 GAATCCCTTCCTTGTCTTGGATCTTAGCGTTGACGTTATCGATGGTATCGGAGCTTTTCT 782
Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
| || | || ||||| || || || || ||||| |||||||| |||||
Sbjct 783 -CCTCAAGCGTGATGGTCTTGCCGGTTAGGGTTTTCACAAAAATCTGCAT 831
>seq188063
Length=7454
Score = 91.5 bits (100), Expect = 1e-13
Identities = 162/231 (70%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194
|||||||||| | | | || ||||| |||||||| || ||||| ||||||||||||
Sbjct 508 TGCCACCTCTGAGACGGAGGACCAAATGGAGGGTGGATTCCTTTTGGATGTTGTAATCGG 567
Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254
|| | | |||| || | ||| || || ||| | || | | ||| ||||| ||
Sbjct 568 CAAGGGTACGACCGTCCTCGAGTTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTG 627
Query 15255 GAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATC-GCTATTTTC 15312
|||| ||||| ||||| || || ||| || || | || |||||||| | |||||
Sbjct 628 GAATCCCTTCCTTGTCTTGGATCTTAGCT-TTGACGTTATCGATGGTATCAGAGCTTTTC 686
Query 15313 TACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
| | || | || ||||| || || || || ||||| || ||||| |||||
Sbjct 687 T-CCTCAAGCGTGATGGTCTTGCCGGTTAGGGTTTTCACGAAAATCTGCAT 736
>seq194543
Length=10949
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/213 (69%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220
||||| ||||| ||||| ||||||||||||||| || | | |||| || | |||
Sbjct 3228 TGAAGCGTGGACTCTTTCTGTATGTTGTAATCGGCGAGCGTACGGCCGTCCTCGAGCTGT 3169
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279
|| ||||| | || | ||| || || || || |||||||| || || || |||
Sbjct 3168 TTTCCAGCAAAGATTAGACGCTGCTGATCCGGAGGGATTCCTTCCTTATCCTGGATCTTT 3109
Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339
||| || || | || || |||||| |||| || || | ||| || || ||||| ||
Sbjct 3108 GCT-TTCACGTTGTCGATAGTATCGGAGCTTTCGACCTCGAGGGTGATTGTCTTACCAGT 3050
Query 15340 CAGAGTTTTTACAAAAATTTGCATATTTGAAAA 15372
|| ||||| || || || ||||| | | ||||
Sbjct 3049 TAGGGTTTTCACGAAGATCTGCATCTGTTAAAA 3017
>seq155647
Length=3035
Score = 82.4 bits (90), Expect = 6e-11
Identities = 143/208 (69%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220
||||| || || || || || |||||||| ||| ||| | | |||| || | |||
Sbjct 2212 TGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTCCGACCGTCCTCGAGCTGT 2153
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
||||||||| | || | ||||| ||||| ||| || ||||| ||||| || ||
Sbjct 2152 TTGCCAGCGAAGATGAGGCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTA 2093
Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340
||| ||| | || ||||| || ||| || || | || ||||| ||||| ||
Sbjct 2092 GCCTTGACATTGTCGATGGTGTCCGAGGATTCAACCTCGAGAGTTATGGTCTTACCCGTT 2033
Query 15341 AGAGTTTTTACAAAAATTTGCATATTTG 15368
|| ||||| || || || ||||| ||||
Sbjct 2032 AGGGTTTTGACGAAGATCTGCATTTTTG 2005
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361295492146023
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