Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq162333 107 1e-18 seq194317 96.9 3e-15 seq181690 96.9 3e-15 seq176217 96.9 3e-15 seq160375 96.9 3e-15 seq101090 95.1 9e-15 seq93507 93.3 3e-14 seq188063 91.5 1e-13 seq194543 84.2 2e-11 seq155647 82.4 6e-11 >seq162333 Length=3517 Score = 107 bits (118), Expect = 1e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| || | || |||||||||||||||||||| || ||||| |||||||| || Sbjct 3155 CCACCCCTGAGCCTCAAAACTAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCA 3096 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||||||||||||||||||| | ||||| | ||||| || |||| Sbjct 3095 AGAGTCCGACCATCTTCTAATTGTTTGCCAGCGAAAATCAATCTCTGTTGATCAGGTGGA 3036 Query 15257 ATTCCTTCTTTGTC 15270 || ||||| ||||| Sbjct 3035 ATGCCTTCCTTGTC 3022 >seq194317 Length=10706 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || ||||| || || || |||||||| ||| |||| |||| |||| || | || Sbjct 1330 TGGAGCGTGGATTCCTTCTGGATGTTGTAGTCGGCTAGAGTTCTTCCGTCCTCCAGCTGC 1389 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 ||||| ||| | || | || |||||||| ||| || ||||||||||| || ||| Sbjct 1390 TTGCCGGCGAAGATAAGGCGCTGTTGGTCTGGTGGTATGCCTTCTTTGTCCTGGATCTTT 1449 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || ||| | || ||||| || ||| || |||| ||| |||||||| || || Sbjct 1450 GCT-TTGACATTGTCGATGGTGTCAGAGGATTCAACCTCTAGGGTTATGGTTTTCCCGGT 1508 Query 15340 CAGAGTTTTTACAAAAATTTGCATATT 15366 | ||||| || || || ||||| || Sbjct 1509 TAAGGTTTTGACGAAGATCTGCATCTT 1535 >seq181690 Length=5866 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||||||||| || || ||||| || |||||||| ||| | ||| | || || Sbjct 3208 AACCAAATGAAGGGTCGACTCCTTTTGGATATTGTAATCAGCTAGGGTCCTCCCATCCTC 3267 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 || ||||| || || | || | | ||| ||||| || || || || || || Sbjct 3268 CAACTGTTTCCCTGCAAAGATAAGCCTTTGCTGGTCTGGGGGGATCCCCTCCTTATCTTG 3327 Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 ||| ||||| ||| || | || |||||||| | | || || || | ||| ||||| | Sbjct 3328 AATCTTTGC-CTTAACGTTGTCAATGGTATCCGAACTCTCCACCTCAAGGGTTATGGTCT 3386 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | ||||| || ||||| ||||| ||||||||| Sbjct 3387 TCCCTGTGAGGGTTTTCACAAATATTTGCATA 3418 >seq176217 Length=4970 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || ||||| || || ||||| ||||||||||| ||| | ||| | || || Sbjct 2310 ACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAATCCGCTAGGGTCCTCCCATCCTCC 2369 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||| ||||| | |||| | || ||||| ||||| ||||| || || Sbjct 2370 AGTTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATCCCTTCCTTATCTTGG 2429 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||||| ||| || | || || |||||| | |||| || || || || ||||| || Sbjct 2430 ATCTTTGC-CTTAACGTTATCAATTGTATCGGAACTTTCCACCTCCAAAGTGATGGTCTT 2488 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||||||| || || |||||||| Sbjct 2489 CCCGGTGAGAGTTTTCACGAATATTTGCAT 2518 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||||||||| | | | || ||||| |||||||| || ||||| || ||||||||| Sbjct 2518 TGCCACCTCTGAGACGGAGCACCAAATGGAGGGTGGATTCCTTTTGGATATTGTAATCGG 2577 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | | |||| || | ||| ||||| || | || | | ||| ||||| | Sbjct 2578 CAAGGGTACGGCCGTCCTCGAGTTGCTTGCCGGCAAAAATAAGCCTTTGCTGGTCTGGGG 2637 Query 15255 GAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 |||||||||| ||||| || || ||| || || | || || || || |||| Sbjct 2638 GAATTCCTTCCTTGTCCTGGATCTTAGCT-TTGACGTTATCAATTGTGTCAGAGCTTTCG 2696 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| || |||||||| |||||||| || || || || |||||||| Sbjct 2697 ACCTCTAAAGTGATGGTTTTTCCTGTCAGGGTCTTCACGAATATTTGCAT 2746 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || |||||||| || || ||||| |||||||||||| || | | | || || Sbjct 2766 ACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAATCGGCAAGGGTACGGCCATCCTCG 2825 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| ||||| || | || | | ||| ||||| ||||||||||| ||||| Sbjct 2826 AGTTGCTTGCCGGCAAAGATAAGCCTTTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 2885 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| || || | || || || || |||| || || || || |||||||| Sbjct 2886 ATCTTAGCT-TTGACGTTATCAATAGTGTCAGAGCTTTCGACCTCCAAAGTGATGGTTTT 2944 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||||| ||||| || || || ||||| Sbjct 2945 TCCTGTCAGGGTTTTCACGAAGATCTGCAT 2974 >seq160375 Length=3367 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCGCGTCTTC 15213 || || ||||||||||| || || || ||||||||||| || || | | |||| || Sbjct 1172 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCCAAG-GTACGGCCGTCCTC 1230 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 ||||| || |||||| | || | | || ||||| ||| ||||| || ||||| Sbjct 1231 CAATTGCTTTCCAGCGAAAATAAGCCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTG 1290 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 |||||| ||| || | || ||||| ||| |||| || || ||||| ||||| || Sbjct 1291 AATTTTAGCCTTCACGTTATCAATGGTGTCGGAGCTTTCCACCTCCAAGGTGATGGTCTT 1350 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| ||||| || ||||| Sbjct 1351 GCCGGTGAGGGTTTTCACAAAGATCTGCAT 1380 >seq101090 Length=1060 Score = 95.1 bits (104), Expect = 9e-15 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCG 15208 || ||||||||||||||||| || || ||||| |||||||| || ||| | | | Sbjct 185 CTCAAAACTAAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTCCGCAAGAGTCCGACCA 244 Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| ||||||||||||||| | ||||| | |||| | || |||||| ||||| ||| Sbjct 245 TCTTCCAATTGTTTGCCAGCGAAAATCAATCTTTGTGGATCAGGTGGAATGCCTTCCTTG 304 Query 15269 TC 15270 || Sbjct 305 TC 306 >seq93507 Length=917 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||||||||| | | | || ||||| |||||||| || ||||| |||||||||||| Sbjct 603 TGCCACCTCTGAGACGAAGGACCAAATGGAGGGTGGATTCCTTTTGGATGTTGTAATCGG 662 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | | |||| || | ||| || || ||| | || | | ||| ||||| || Sbjct 663 CAAGGGTACGGCCGTCCTCAAGTTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTG 722 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATC-GCTATTTTCT 15313 |||| ||||| ||||| || || || || | || |||||||| | |||||| Sbjct 723 GAATCCCTTCCTTGTCTTGGATCTTAGCGTTGACGTTATCGATGGTATCGGAGCTTTTCT 782 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | || ||||| || || || || ||||| |||||||| ||||| Sbjct 783 -CCTCAAGCGTGATGGTCTTGCCGGTTAGGGTTTTCACAAAAATCTGCAT 831 >seq188063 Length=7454 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||||||||| | | | || ||||| |||||||| || ||||| |||||||||||| Sbjct 508 TGCCACCTCTGAGACGGAGGACCAAATGGAGGGTGGATTCCTTTTGGATGTTGTAATCGG 567 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | | |||| || | ||| || || ||| | || | | ||| ||||| || Sbjct 568 CAAGGGTACGACCGTCCTCGAGTTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTG 627 Query 15255 GAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATC-GCTATTTTC 15312 |||| ||||| ||||| || || ||| || || | || |||||||| | ||||| Sbjct 628 GAATCCCTTCCTTGTCTTGGATCTTAGCT-TTGACGTTATCGATGGTATCAGAGCTTTTC 686 Query 15313 TACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | | || | || ||||| || || || || ||||| || ||||| ||||| Sbjct 687 T-CCTCAAGCGTGATGGTCTTGCCGGTTAGGGTTTTCACGAAAATCTGCAT 736 >seq194543 Length=10949 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| ||||| ||||| ||||||||||||||| || | | |||| || | ||| Sbjct 3228 TGAAGCGTGGACTCTTTCTGTATGTTGTAATCGGCGAGCGTACGGCCGTCCTCGAGCTGT 3169 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || ||||| | || | ||| || || || || |||||||| || || || ||| Sbjct 3168 TTTCCAGCAAAGATTAGACGCTGCTGATCCGGAGGGATTCCTTCCTTATCCTGGATCTTT 3109 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || || | || || |||||| |||| || || | ||| || || ||||| || Sbjct 3108 GCT-TTCACGTTGTCGATAGTATCGGAGCTTTCGACCTCGAGGGTGATTGTCTTACCAGT 3050 Query 15340 CAGAGTTTTTACAAAAATTTGCATATTTGAAAA 15372 || ||||| || || || ||||| | | |||| Sbjct 3049 TAGGGTTTTCACGAAGATCTGCATCTGTTAAAA 3017 >seq155647 Length=3035 Score = 82.4 bits (90), Expect = 6e-11 Identities = 143/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || || || || |||||||| ||| ||| | | |||| || | ||| Sbjct 2212 TGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTCCGACCGTCCTCGAGCTGT 2153 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||||||| | || | ||||| ||||| ||| || ||||| ||||| || || Sbjct 2152 TTGCCAGCGAAGATGAGGCGTTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTA 2093 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || ||||| || ||| || || | || ||||| ||||| || Sbjct 2092 GCCTTGACATTGTCGATGGTGTCCGAGGATTCAACCTCGAGAGTTATGGTCTTACCCGTT 2033 Query 15341 AGAGTTTTTACAAAAATTTGCATATTTG 15368 || ||||| || || || ||||| |||| Sbjct 2032 AGGGTTTTGACGAAGATCTGCATTTTTG 2005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361295492146023