Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq181690 89.7 4e-13 >seq181690 Length=5866 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | || || ||||||||||||||||||||||| | || |||| || Sbjct 2981 ACCAAGTGAAGGGTCGATTCCTTTTGAATATTGTAATCCGCAAGGGTGCGTCCGTCTTCA 3040 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 |||||||| || ||| | ||||| || ||||| || || | ||||| || || | Sbjct 3041 AGCTGTTTTCCAGCAAAGATAAGCCTTTGCTGGTCTGGTGGGATCCCCTCCTTATCTTGA 3100 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || || || | | | | ||||| | |||| ||| | ||| ||||| || Sbjct 3101 ATCTTTGCCTTAACGTTGTCAATGGTATCCGAACTCTCCACTTCAAGGGTTATGGTCTTC 3160 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| | ||||| ||||| |||||||| Sbjct 3161 CCTGTGAGGGTTTTCACAAATATTTGCAT 3189 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || ||||||||||| ||||||||||| || | || | | ||||||| |||||| || Sbjct 3221 GTCGACTCCTTTTGGATATTGTAATCAGCTAGGGTCCTCCCATCCTCCAACTGTTTCCCT 3280 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | ||||| || ||||| || ||| | ||||| || || ||| || || Sbjct 3281 GCAAAGATAAGCCTTTGCTGGTCTGGGGGGATCCCCTCCTTATCTTGAATCTTTGCCTTA 3340 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | | ||||| | |||| || | ||| ||||| || ||||| | ||| Sbjct 3341 ACGTTGTCAATGGTATCCGAACTCTCCACCTCAAGGGTTATGGTCTTCCCTGTGAGGGTT 3400 Query 19025 TTGACAAAAATTTGCAT 19041 || ||||| |||||||| Sbjct 3401 TTCACAAATATTTGCAT 3417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413561253120982