Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq181690 89.7 4e-13
>seq181690
Length=5866
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892
|||| ||| | || || ||||||||||||||||||||||| | || |||| ||
Sbjct 2981 ACCAAGTGAAGGGTCGATTCCTTTTGAATATTGTAATCCGCAAGGGTGCGTCCGTCTTCA 3040
Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952
|||||||| || ||| | ||||| || ||||| || || | ||||| || || |
Sbjct 3041 AGCTGTTTTCCAGCAAAGATAAGCCTTTGCTGGTCTGGTGGGATCCCCTCCTTATCTTGA 3100
Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012
|| || || || | | | | ||||| | |||| ||| | ||| ||||| ||
Sbjct 3101 ATCTTTGCCTTAACGTTGTCAATGGTATCCGAACTCTCCACTTCAAGGGTTATGGTCTTC 3160
Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
||||| | ||||| ||||| ||||||||
Sbjct 3161 CCTGTGAGGGTTTTCACAAATATTTGCAT 3189
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904
|| ||||||||||| ||||||||||| || | || | | ||||||| |||||| ||
Sbjct 3221 GTCGACTCCTTTTGGATATTGTAATCAGCTAGGGTCCTCCCATCCTCCAACTGTTTCCCT 3280
Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964
||| | ||||| || ||||| || ||| | ||||| || || ||| || ||
Sbjct 3281 GCAAAGATAAGCCTTTGCTGGTCTGGGGGGATCCCCTCCTTATCTTGAATCTTTGCCTTA 3340
Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024
|| | | | | ||||| | |||| || | ||| ||||| || ||||| | |||
Sbjct 3341 ACGTTGTCAATGGTATCCGAACTCTCCACCTCAAGGGTTATGGTCTTCCCTGTGAGGGTT 3400
Query 19025 TTGACAAAAATTTGCAT 19041
|| ||||| ||||||||
Sbjct 3401 TTCACAAATATTTGCAT 3417
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 413561253120982
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |