Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq194543 104 2e-17 seq176217 91.5 1e-13 seq181690 89.7 4e-13 >seq194543 Length=10949 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || || ||||| || | ||||| ||| | ||| ||| || || ||||||||||| | Sbjct 3708 CCACCCCTCAACCTCAGCACCAGATGCAACGTCGACTCCTTCTGGATATTATAATCTGCT 3649 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | ||| |||| ||||| || || || ||||| ||||| || ||||| || |||| Sbjct 3648 AGGGTCCGCCCATCTTCCAACTGCTTACCGGCAAAAATCAAACGCTGCTGATCTGGAGGA 3589 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||||||| ||||| ||||| || | | |||||| | ||| || Sbjct 3588 ATCCCTTCTTTATCTTGGATTTTGGCCTTGACATTATCGATAGTATCAGAGCTCTCGACT 3529 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||||||||| || || | || || || || |||||||| Sbjct 3528 TCCAAGGTAATTGTTTTGCCAGTAAGGGTTTTGACGAAGATTTGCAT 3482 >seq176217 Length=4970 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||| |||| | | |||||| || || || ||| ||||| || || ||||| | Sbjct 2292 CCTCCCCTCAGACGAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAATCCGCT 2351 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | | |||| |||| |||||| || ||||| |||| || ||||||||| | || Sbjct 2352 AGGGTCCTCCCATCCTCCAGTTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGA 2411 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||| |||||| || ||| || || || ||| ||||| | ||||| Sbjct 2412 ATCCCTTCCTTATCTTGGATCTTTGCCTTAACGTTATCAATTGTATCGGAACTTTCCACC 2471 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || || || || ||||| | ||| ||||| |||||||||||| Sbjct 2472 TCCAAAGTGATGGTCTTCCCGGTGAGAGTTTTCACGAATATTTGCATG 2519 >seq181690 Length=5866 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| || || ||| ||||| ||||| ||||| || | | |||| ||| Sbjct 3209 ACCAAATGAAGGGTCGACTCCTTTTGGATATTGTAATCAGCTAGGGTCCTCCCATCCTCC 3268 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 || ||||| |||||||| || | || ||||||||| | || | || || |||||| | Sbjct 3269 AACTGTTTCCCTGCAAAGATAAGCCTTTGCTGGTCTGGGGGGATCCCCTCCTTATCTTGA 3328 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || ||| || || | ||| ||||| | |||||| || | || || || || Sbjct 3329 ATCTTTGCCTTAACGTTGTCAATGGTATCCGAACTCTCCACCTCAAGGGTTATGGTCTTC 3388 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || | || ||||||||||||||||| Sbjct 3389 CCTGTGAGGGTTTTCACAAATATTTGCAT 3417 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 |||||| || || || ||| || ||||| || || || ||| | |||| || Sbjct 2752 CACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGCTAAAGTCCTTCCATCCTC 2811 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 ||||||||| |||||||| ||||||| ||||| ||| | || | ||| || || || Sbjct 2812 CAATTGTTTCCCTGCAAAGATCAACCTCTGCTGATCCGGCGGAATACCCTCCTTGTCCTG 2871 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||||||| || || | ||| || |||| |||||| || | || || || || Sbjct 2872 AATTTTTGCCTTTACGTTGTCAATTGTGTCTGAACTCTCCACCTCCAAAGTGATAGTCTT 2931 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || ||||| ||||| |||||||| Sbjct 2932 GCCTGTCAAGGTCTTAACAAAGATTTGCAT 2961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353911951858044