Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_005068.1
Length=110907
Score E
Sequences producing significant alignments: (Bits) Value
seq194543 104 2e-17
seq176217 91.5 1e-13
seq181690 89.7 4e-13
>seq194543
Length=10949
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954
|| || ||||| || | ||||| ||| | ||| ||| || || ||||||||||| |
Sbjct 3708 CCACCCCTCAACCTCAGCACCAGATGCAACGTCGACTCCTTCTGGATATTATAATCTGCT 3649
Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014
| ||| |||| ||||| || || || ||||| ||||| || ||||| || ||||
Sbjct 3648 AGGGTCCGCCCATCTTCCAACTGCTTACCGGCAAAAATCAAACGCTGCTGATCTGGAGGA 3589
Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074
| |||||||||||| ||||| ||||| || | | |||||| | ||| ||
Sbjct 3588 ATCCCTTCTTTATCTTGGATTTTGGCCTTGACATTATCGATAGTATCAGAGCTCTCGACT 3529
Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| | ||||||||||| || || | || || || || ||||||||
Sbjct 3528 TCCAAGGTAATTGTTTTGCCAGTAAGGGTTTTGACGAAGATTTGCAT 3482
>seq176217
Length=4970
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954
||||| |||| | | |||||| || || || ||| ||||| || || ||||| |
Sbjct 2292 CCTCCCCTCAGACGAAGCACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAATCCGCT 2351
Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014
| | | |||| |||| |||||| || ||||| |||| || ||||||||| | ||
Sbjct 2352 AGGGTCCTCCCATCCTCCAGTTGTTTCCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGA 2411
Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074
| ||||| |||||| || ||| || || || ||| ||||| | |||||
Sbjct 2412 ATCCCTTCCTTATCTTGGATCTTTGCCTTAACGTTATCAATTGTATCGGAACTTTCCACC 2471
Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122
|| | || || || || ||||| | ||| ||||| ||||||||||||
Sbjct 2472 TCCAAAGTGATGGTCTTCCCGGTGAGAGTTTTCACGAATATTTGCATG 2519
>seq181690
Length=5866
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972
|||||||| || || ||| ||||| ||||| ||||| || | | |||| |||
Sbjct 3209 ACCAAATGAAGGGTCGACTCCTTTTGGATATTGTAATCAGCTAGGGTCCTCCCATCCTCC 3268
Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032
|| ||||| |||||||| || | || ||||||||| | || | || || |||||| |
Sbjct 3269 AACTGTTTCCCTGCAAAGATAAGCCTTTGCTGGTCTGGGGGGATCCCCTCCTTATCTTGA 3328
Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092
|| ||| || || | ||| ||||| | |||||| || | || || || ||
Sbjct 3329 ATCTTTGCCTTAACGTTGTCAATGGTATCCGAACTCTCCACCTCAAGGGTTATGGTCTTC 3388
Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| || | || |||||||||||||||||
Sbjct 3389 CCTGTGAGGGTTTTCACAAATATTTGCAT 3417
Score = 86.0 bits (94), Expect = 4e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971
|||||| || || || ||| || ||||| || || || ||| | |||| ||
Sbjct 2752 CACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGCTAAAGTCCTTCCATCCTC 2811
Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031
||||||||| |||||||| ||||||| ||||| ||| | || | ||| || || ||
Sbjct 2812 CAATTGTTTCCCTGCAAAGATCAACCTCTGCTGATCCGGCGGAATACCCTCCTTGTCCTG 2871
Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091
||||||| || || | ||| || |||| |||||| || | || || || ||
Sbjct 2872 AATTTTTGCCTTTACGTTGTCAATTGTGTCTGAACTCTCCACCTCCAAAGTGATAGTCTT 2931
Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| || || ||||| ||||| ||||||||
Sbjct 2932 GCCTGTCAAGGTCTTAACAAAGATTTGCAT 2961
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 353911951858044
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |