Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq188192 84.2 2e-11 >seq188192 Length=7493 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 19994 CTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAA 20053 ||||| |||| ||| ||||| || || || || |||||||| || | | |||| | Sbjct 4802 CTCAAAACCAGATGAAGTGTTGACTCCTTCTGGATGTTGTAGTCTGCTAGAGTTCGGCCA 4861 Query 20054 TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGAT-CGACGGGCACGCCTTCTTT 20112 ||||||||||||||||| ||| |||| | |||||||||| || |||| | ||||| || Sbjct 4862 TCTTCCAATTGTTTGCCAGCAAAAATCAATCTCTGTTGATCCGGCGGG-ATACCTTCCTT 4920 Query 20113 GTC 20115 ||| Sbjct 4921 GTC 4923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418563418115043