Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq176217 96.9 3e-15 seq160375 96.9 3e-15 seq156113 86.0 5e-12 >seq176217 Length=4970 Score = 96.9 bits (106), Expect = 3e-15 Identities = 167/239 (70%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 48490 ACAGTCA-AAACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGT 48548 ||| ||| ||||| || || | | | ||| |||||||| ||| |||||||| |||| Sbjct 1825 ACACTCAGAAACCACCTCGGAGGCGAAGCACCAAATGAAGAGTGGATTCCTTTTGGATGT 1884 Query 48549 TGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGC 48607 | || || || || || || |||||||||||||||| || || | || || | |||| Sbjct 1885 TATAGTCGGC-AAGGGTGCGGCCGTCCTCCAGCTGCTTGCCTGCGAAGATCAACCTCTGC 1943 Query 48608 TGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCG 48667 |||||| || | | ||||| || || ||| ||||| | | || |||||| Sbjct 1944 TGATCCGGTGGAATCCCCTCCTTATCTTGGATCTTCGCCTTGACATTATCAATTGTATCG 2003 Query 48668 GTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | | ||| ||| | ||||| || || ||||| | || ||||||||||||||||| Sbjct 2004 GAACTCTCAACCTCCAAGGTTATAGTCTTCCCGGTCAATGTCTTCACAAAAATCTGCAT 2062 >seq160375 Length=3367 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || ||||| ||| |||||| || ||||||||||||||||| || ||||||| Sbjct 1171 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCCAAGGTACGGCCGTCCTC 1230 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || ||||| || || |||| | | |||||| || || | | |||||||| Sbjct 1231 CAATTGCTTTCCAGCGAAAATAAGCCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTG 1290 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 |||||| ||| | | ||||| |||| ||| ||| | || ||||| || Sbjct 1291 AATTTTAGCCTTCACGTTATCAATGGTGTCGGAGCTTTCCACCTCCAAGGTGATGGTCTT 1350 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 |||||||| ||||||||||| ||||||||| Sbjct 1351 GCCGGTGAGGGTTTTCACAAAGATCTGCATC 1381 >seq156113 Length=3066 Score = 86.0 bits (94), Expect = 5e-12 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || | |||||| | ||| | ||| | || |||||| || ||||| ||||| || Sbjct 1112 CCACCCCTCAACCTCAGCACCAGATGCAACGTCGACTCCTTCTGGATGTTATAATCCGCT 1053 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | |||| | || |||| |||||||| || |||| || |||||||||||| || Sbjct 1052 AGGGTTCGCCCATCTTCCAATTGCTTACCAGCGAAAATCAACCGCTGCTGATCCGGAGGA 993 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTC-CGT 48678 | | ||||||||| ||||| ||| | | | || ||||||| || ||| || Sbjct 992 ATCCCTTCCTTGTCTTGGATTTTGGCCTTTACATTGTCGATAGTATCGG-AG-CTCTCGA 935 Query 48679 C-TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 | || | || || ||||| ||||| || ||||| || || ||||||||| || Sbjct 934 CTTCCAAGGTGATTGTTTTGCCGGTTAGGGTTTTGACGAAGATCTGCATCCTG 882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420223357998203