Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq176217 96.9 3e-15
seq160375 96.9 3e-15
seq156113 86.0 5e-12
>seq176217
Length=4970
Score = 96.9 bits (106), Expect = 3e-15
Identities = 167/239 (70%), Gaps = 3/239 (1%)
Strand=Plus/Plus
Query 48490 ACAGTCA-AAACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGT 48548
||| ||| ||||| || || | | | ||| |||||||| ||| |||||||| ||||
Sbjct 1825 ACACTCAGAAACCACCTCGGAGGCGAAGCACCAAATGAAGAGTGGATTCCTTTTGGATGT 1884
Query 48549 TGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGC 48607
| || || || || || || |||||||||||||||| || || | || || | ||||
Sbjct 1885 TATAGTCGGC-AAGGGTGCGGCCGTCCTCCAGCTGCTTGCCTGCGAAGATCAACCTCTGC 1943
Query 48608 TGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCG 48667
|||||| || | | ||||| || || ||| ||||| | | || ||||||
Sbjct 1944 TGATCCGGTGGAATCCCCTCCTTATCTTGGATCTTCGCCTTGACATTATCAATTGTATCG 2003
Query 48668 GTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
| | ||| ||| | ||||| || || ||||| | || |||||||||||||||||
Sbjct 2004 GAACTCTCAACCTCCAAGGTTATAGTCTTCCCGGTCAATGTCTTCACAAAAATCTGCAT 2062
>seq160375
Length=3367
Score = 96.9 bits (106), Expect = 3e-15
Identities = 148/211 (70%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576
||| || ||||| ||| |||||| || ||||||||||||||||| || |||||||
Sbjct 1171 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCCAAGGTACGGCCGTCCTC 1230
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
|| ||||| || || |||| | | |||||| || || | | ||||||||
Sbjct 1231 CAATTGCTTTCCAGCGAAAATAAGCCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTG 1290
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696
|||||| ||| | | ||||| |||| ||| ||| | || ||||| ||
Sbjct 1291 AATTTTAGCCTTCACGTTATCAATGGTGTCGGAGCTTTCCACCTCCAAGGTGATGGTCTT 1350
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
|||||||| ||||||||||| |||||||||
Sbjct 1351 GCCGGTGAGGGTTTTCACAAAGATCTGCATC 1381
>seq156113
Length=3066
Score = 86.0 bits (94), Expect = 5e-12
Identities = 162/233 (70%), Gaps = 4/233 (2%)
Strand=Plus/Minus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
|| || | |||||| | ||| | ||| | || |||||| || ||||| ||||| ||
Sbjct 1112 CCACCCCTCAACCTCAGCACCAGATGCAACGTCGACTCCTTCTGGATGTTATAATCCGCT 1053
Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619
| |||| | || |||| |||||||| || |||| || |||||||||||| ||
Sbjct 1052 AGGGTTCGCCCATCTTCCAATTGCTTACCAGCGAAAATCAACCGCTGCTGATCCGGAGGA 993
Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTC-CGT 48678
| | ||||||||| ||||| ||| | | | || ||||||| || ||| ||
Sbjct 992 ATCCCTTCCTTGTCTTGGATTTTGGCCTTTACATTGTCGATAGTATCGG-AG-CTCTCGA 935
Query 48679 C-TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730
| || | || || ||||| ||||| || ||||| || || ||||||||| ||
Sbjct 934 CTTCCAAGGTGATTGTTTTGCCGGTTAGGGTTTTGACGAAGATCTGCATCCTG 882
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420223357998203
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |