Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq124955 122 1e-23 seq176132 109 9e-20 seq149564 102 1e-17 seq191128 93.3 7e-15 seq141455 93.3 7e-15 >seq124955 Length=1665 Score = 122 bits (134), Expect = 1e-23 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| || || ||||| || || ||| | | ||||||||| | || || | Sbjct 1180 GAGACAACATCCAGGGCATAACCAAACCGGCAATCAGGAGGCTGGCTCGTAGGGGAGGGG 1239 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| || || ||| |||| || |||| |||| || |||||||||||||| Sbjct 1240 TGAAGCGTATCAGCGGCTTGATCTACGAGGAGACGCGTGGCGTGCTGAAGATCTTCCTCG 1299 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| ||| || | ||||||| | ||| || |||||||||| | ||||| || || Sbjct 1300 AGAACGTGATTCGTGATGCTGTGACCTACACAGAGCACGCTAGGAGGAAGACCGTGACGG 1359 Query 16638 CCATGGATATCGTCTATGCATTGAA 16662 | ||||| | || ||||| ||||| Sbjct 1360 CGATGGACGTGGTTTATGCTTTGAA 1384 >seq176132 Length=4960 Score = 109 bits (120), Expect = 9e-20 Identities = 171/245 (70%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || ||||| |||||||| || ||||||||||| || ||||| ||| ||||| | | || Sbjct 3083 CTCCGAGACAACATCCAGGGCATCACCAAGCCGGCGATCCGGCGTTTGGCTAGGAGAGGC 3142 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||| | | || | |||| || |||| ||| | ||| | |||||||| Sbjct 3143 GGGGTCAAGAGGATTAGCGGCCTTATCTACGAGGAGACTCGCGGTGTGCTCAAGATCTTT 3202 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| ||| |||||| | ||| ||||||||||| | | |||||||| Sbjct 3203 CTAGAGAACGTCATCAGAGATGCTGTGACCTACACCGAGCACGCCAGGAGGAAGACTGTG 3262 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | ||||| | |||||||| |||| | || || | | | || || |||||| Sbjct 3263 ACGGCTATGGACGTTGTCTATGCGCTGAAGAGGCAGGGGAGGACCTTGTACGGGTTTGGA 3322 Query 16694 AGTTA 16698 |||| Sbjct 3323 GGTTA 3327 >seq149564 Length=2673 Score = 102 bits (112), Expect = 1e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || ||||| |||||||| |||||||| ||||| || || || || ||||| | | || Sbjct 1707 CTCCGAGACAACATCCAGGGAATCACAAAGCCGGCGATTCGGCGGCTGGCGAGGAGAGGA 1648 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| ||| | || || | |||| || |||| ||| | ||| | ||||||||| Sbjct 1647 GGAGTGAAGAGGATCAGCGGTCTCATCTACGAGGAGACTCGAGGGGTTCTCAAGATCTTC 1588 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| || |||| ||| || | ||| ||||||||||| | | ||||| || Sbjct 1587 TTGGAGAATGTGATCCGTGACGCCGTGACCTACACCGAGCACGCGAGGAGGAAGACCGTG 1528 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAA 16662 || |||||||| |||| || || ||||| Sbjct 1527 ACGGCCATGGATGTCGTGTACGCGTTGAA 1499 >seq191128 Length=8624 Score = 93.3 bits (102), Expect = 7e-15 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || ||||| |||||||| || ||||| |||||||| || | |||||||| | | || Sbjct 5555 CTCCGAGACAACATCCAGGGGATCACGAAGCCAGCGATTAGGCGTCTGGCGAGGAGAGGA 5496 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| ||| | || || | |||| || |||| ||| | ||| | ||||||||| Sbjct 5495 GGAGTGAAGAGGATCAGCGGTCTCATCTACGAGGAGACTCGAGGGGTTCTCAAGATCTTC 5436 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| || |||| || || | || ||||||||||| | | ||||| || Sbjct 5435 TTGGAGAATGTGATCCGCGACGCCGTGACATACACCGAGCACGCGAGGAGGAAGACCGTG 5376 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAA 16662 || |||||||| |||| || || ||||| Sbjct 5375 ACGGCCATGGATGTCGTGTACGCCTTGAA 5347 >seq141455 Length=2279 Score = 93.3 bits (102), Expect = 7e-15 Identities = 164/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||| || ||||||||||| || || || | || ||| | | || || || Sbjct 631 GACAACATCCAGGGCATCACCAAGCCTGCCATTCGAAGGCTCGCTAGAAGGGGAGGCGTG 572 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||| | | ||||| || |||| || || | ||||| ||| ||||||||||| | | Sbjct 571 AAGAGGATTTCTGGGCTGATCTACGAGGAAACTCGTGGCGTTCTGAAGATCTTCTTGGAA 512 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || | ||||||| | ||| || ||||| || | | ||||| || || || Sbjct 511 AATGTGATTCGTGATGCTGTTACCTACACTGAGCATGCCAGGAGGAAGACGGTGACGGCC 452 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | || ||||| |||| | || || | | | ||||| ||||| |||| Sbjct 451 ATGGATGTGGTTTATGCGCTGAAGAGGCAGGGAAGGACCCTCTATGGCTTTGGCGGTTA 393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78892152995679