Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq198569 266 9e-67 seq197127 149 2e-31 seq197706 145 2e-30 seq200167 136 1e-27 seq198258 116 1e-21 seq198484 86.0 2e-12 >seq198569 Length=8129 Score = 266 bits (294), Expect = 9e-67 Identities = 353/486 (73%), Gaps = 18/486 (4%) Strand=Plus/Plus Query 19585 TTGTCTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTT 19644 |||| | ||||||||| | || ||||| || ||| | |||||||||| || Sbjct 2748 TTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTT 2807 Query 19645 ACAGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTC 19704 | | || || ||| |||| ||||| || |||||| |||| || | |||| ||| Sbjct 2808 TCCGTTTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTA 2867 Query 19705 TTGCTGTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTT 19763 |||||| ||||| | | || ||| |||| ||||| |||||| |||||| |||||||| Sbjct 2868 CTGCTGT-TTTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTA 2926 Query 19764 GGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATG 19823 || |||||||||||||| ||||| ||| |||||||||| || || ||||||||||||||| Sbjct 2927 GGAATCTCTGGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATG 2986 Query 19824 CATCC-GTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTAT 19882 || || ||| | ||| | ||||| ||||| ||||| | || ||||| ||| |||||| Sbjct 2987 CACCCATTTCGATATGTTAGGTGTAGCTGGTGTATTGGACGGCTCTCTATTCAATGCTAT 3046 Query 19883 GCACGGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAA 19942 ||| || ||||| |||| | |||| |||||| || ||| || Sbjct 3047 GCATGGTTCCTTGGTAGCTTC-----TAATCAGGGAAACCAC---------CCCGC-TAA 3091 Query 19943 CTATGGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTA 20002 | || || | || || ||||| || || || ||||||||||| ||||| || || || Sbjct 3092 TGAAGGGTACAGATTTGGTCAAGAGGAGGAAACTTATAATATTGTAGCTGCTCATGGTTA 3151 Query 20003 CTTTGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTT 20062 ||||| ||||||| || ||||||||| |||||| || ||||||||||||||||| || Sbjct 3152 TTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACATTTTTT 3211 Query 20063 TCTTGC 20068 || || Sbjct 3212 CCTAGC 3217 >seq197127 Length=16832 Score = 149 bits (164), Expect = 2e-31 Identities = 125/151 (83%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 19706 TGCTGTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTG 19764 |||||| ||||| | | || ||| |||| ||||| |||||| |||||| |||||||| | Sbjct 16831 TGCTGT-TTTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTAG 16773 Query 19765 GTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGC 19824 | |||||||||||||| ||||| ||| |||||||||| || || |||||||||||||||| Sbjct 16772 GAATCTCTGGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATGC 16713 Query 19825 ATCCGTTCCACATGCTCGGTGTTGCTGGCGT 19855 | || || |||||| | ||||| ||||| || Sbjct 16712 ACCCATTTCACATGTTAGGTGTAGCTGGTGT 16682 >seq197706 Length=393 Score = 145 bits (160), Expect = 2e-30 Identities = 182/250 (73%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 19363 TACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAG 19422 || || |||| ||| || ||||| ||||||| || || || || || || ||||| | Sbjct 124 TATTAACTGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTCGATATTG 183 Query 19423 ATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAG 19482 |||| || ||||| || ||||| || || || | || || ||||||||||| || || | Sbjct 184 ATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGGAACAATATTATCTCAGGTG 243 Query 19483 CAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCA 19542 | | |||| | || || ||||| |||||||||| ||||| |||||||| | Sbjct 244 CCATTATTCCTACTTCTGCAGCTATAGGCTTGCACTTTTACCCGATATGGGAAGCTGCAT 303 Query 19543 CTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAA 19602 | | ||||| ||||||||||| |||||||| ||| | || |||| | ||||||||| Sbjct 304 CCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTAC 363 Query 19603 TAGGAGTAGC 19612 | || ||||| Sbjct 364 TTGGTGTAGC 373 >seq200167 Length=15642 Score = 136 bits (150), Expect = 1e-27 Identities = 113/138 (82%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 19751 TGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACA 19810 |||||||||||| || |||||||||||||| ||||| ||| ||||||||| || || || Sbjct 10826 TGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTAATGAGCGTATTCCAGGCTGAGCA 10767 Query 19811 CAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCT 19870 ||| ||||||||||| || || |||||| | ||||| ||||| ||||| ||||| || || Sbjct 10766 CAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTTGGTGGCTCCCT 10707 Query 19871 TTTCTCTGCTATGCACGG 19888 ||| | ||||||| || Sbjct 10706 GTTCAGTACTATGCATGG 10689 >seq198258 Length=3934 Score = 116 bits (128), Expect = 1e-21 Identities = 114/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 19742 TTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCA 19801 ||| | || ||| |||||| | || || ||| ||||||| ||||| || |||||||| | Sbjct 3133 TTTGACTGGTGGGATGCCTATGGGAATATCTAGTACTTTCAACTTCTTGATCGTATTCTA 3192 Query 19802 AGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGG 19861 || || |||||||||||| | || || || |||||| | ||||| ||||| |||||||| Sbjct 3193 GGCTGAGCACAATATCCTTTTTCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGG 3252 Query 19862 TGGATCTCTTTTCTCTGCTATGCACGG 19888 || ||||| || ||||||||| || Sbjct 3253 CGGCTCTCTATTTAGTGCTATGCATGG 3279 >seq198484 Length=6561 Score = 86.0 bits (94), Expect = 2e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 20133 AATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAACATG 20191 |||||||| || || ||||| || ||||||||| ||||| | | |||| || || Sbjct 6234 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTG-TAATTAATACCTG 6292 Query 20192 GGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCA 20251 ||| ||| | | || | |||||||| || | ||||||||||| || || |||||||| Sbjct 6293 GGCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCA 6352 Query 20252 TAACTTCCCACTTGATTTAGC 20272 ||||||||| || || |||| Sbjct 6353 TAACTTCCCTCTAGACCTAGC 6373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144098203005468