Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq198569 219 7e-52 seq200167 114 2e-20 seq197127 111 3e-19 seq198484 104 4e-17 seq197886 91.5 2e-13 seq198248 87.8 3e-12 >seq198569 Length=8129 Score = 219 bits (242), Expect = 7e-52 Identities = 324/453 (72%), Gaps = 16/453 (4%) Strand=Plus/Plus Query 211897 TACATGGGAAGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTT 211956 || ||||| | ||||||||||| | |||||| |||||||| |||||||| |||| Sbjct 2780 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGACCTTGGATTGCTGTT 2839 Query 211957 GCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAG 212016 || |||||||| ||||| |||| ||| ||||| ||| | | || ||| | ||||| Sbjct 2840 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAA 2899 Query 212017 GGTTCATTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTA 212076 || || || || || |||||| |||| || || || || |||||||||||| ||||| Sbjct 2900 GGAAGTTTTTCTGATGGGATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATCGTA 2959 Query 212077 TTCCAAGCAGAACATAACATCCTTATGCACCCA-TTCCATATGGCAGGTGTTGCAGGTAT 212135 ||||| || || || || ||||||||||||||| ||| ||||| |||||| || ||| | Sbjct 2960 TTCCAGGCTGAGCACAATATCCTTATGCACCCATTTCGATATGTTAGGTGTAGCTGGTGT 3019 Query 212136 GTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCG 212195 || | || | ||||| ||||||||| ||||| |||| | | ||| || ||| | Sbjct 3020 ATTGGACGGCTCTCTATTCAATGCTATGCATGGTTC-CTTGGT--AGCTT--CTAATCAG 3074 Query 212196 TGAAACCACTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGAC 212255 |||||||| || || ||| || |||| || || ||||| || || || Sbjct 3075 GGAAACCACCCCGCTA-AT-----GAA----GGGTACAGATTTGGTCAAGAGGAGGAAAC 3124 Query 212256 ATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATT 212315 ||||| || || ||||| ||||| || || || || | |||||||| ||||| || Sbjct 3125 TTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 3184 Query 212316 CAACAACAGCAGAAGTTTACACTTCTTCCTCGC 212348 ||||||| | |||||| || ||||| || Sbjct 3185 CAACAACTCTCGTTCTTTACATTTTTTCCTAGC 3217 >seq200167 Length=15642 Score = 114 bits (126), Expect = 2e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 212032 GGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACAT 212091 ||||||||| |||| || || || || |||||||| ||| ||||||||| || || || Sbjct 10825 GGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTAATGAGCGTATTCCAGGCTGAGCAC 10766 Query 212092 AACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTA 212151 |||||||||||||||||||| || ||| |||||| || ||| | || ||||| | | Sbjct 10765 AACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTTGGTGGCTCCCTG 10706 Query 212152 TTCTCTGCTATGCACGGTTCT 212172 ||| | ||||||| |||||| Sbjct 10705 TTCAGTACTATGCATGGTTCT 10685 >seq197127 Length=16832 Score = 111 bits (122), Expect = 3e-19 Identities = 118/155 (76%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 211987 GCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGT 212046 ||||| ||| | | || ||| | ||||| || || || || || |||||| |||| Sbjct 16830 GCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTAGGA 16771 Query 212047 ATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCAC 212106 || || || || |||||||||||| |||||||||| || || || || |||||||||||| Sbjct 16770 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATGCAC 16711 Query 212107 CCATTCCATATGGCAGGTGTTGCAGGTATGTTCGG 212141 ||||| || ||| |||||| || || ||||||| Sbjct 16710 CCATTTCACATGTTAGGTGTAGCTGG--TGTTCGG 16678 >seq198484 Length=6561 Score = 104 bits (114), Expect = 4e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 212411 TAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTT 212470 ||||||| ||||| ||||||||||| || |||||| ||| || || ||| | Sbjct 6232 TAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATACCT 6291 Query 212471 GGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCAC 212530 ||| ||| | ||||| | || ||||||||||||||||||||||| ||| | ||||| | Sbjct 6292 GGGCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTC 6351 Query 212531 ACAACTTCCCACTTGACTTAGC 212552 | |||||||| || ||| |||| Sbjct 6352 ATAACTTCCCTCTAGACCTAGC 6373 >seq197886 Length=1258 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/227 (70%), Gaps = 7/227 (3%) Strand=Plus/Plus Query 212331 TTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTAT 212390 |||||| |||||||| | |||||||| || || | | ||| | | | ||||| Sbjct 378 TTTACATTTCTTCCTAACTGTTTGGCCTGTAATAGGTATCTAGTTCATTGTTTTAGGTAT 437 Query 212391 CTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATC 212450 || |||| ||||||||||||| || || ||||||||||| || |||||| ||| Sbjct 438 TAGCGTTGTGGCTGTCAACCTAAATGGTTTGAATTTCAACCAATCCGTAGTTGAT-AATC 496 Query 212451 -AGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAG 212509 |||| || || ||||||| |||| | ||||| || ||| |||||| | ||| Sbjct 497 AAGGTCGTGTAATTAAGACTTGGGCTGATATCATTAACCATGCTAACTTTGGTACGAAAG 556 Query 212510 T-----TATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAG 212551 | ||| || ||| | ||||| || |||||||| || ||| ||| Sbjct 557 TTGGAGTATTCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAG 603 >seq198248 Length=3867 Score = 87.8 bits (96), Expect = 3e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 212338 TTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACA 212397 || ||||| || | |||||||| | || | ||||| || || | |||||| |||| Sbjct 391 TTTTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACT 332 Query 212398 ATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGAT 212445 ||||| ||||| |||||||| ||||| ||||||||||| || |||||| Sbjct 331 ATGGCTTTCAATCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGAT 284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 805534262828680