Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_006884.2
Length=178249
Score E
Sequences producing significant alignments: (Bits) Value
seq198569 237 2e-57
seq199332 183 3e-41
seq197706 140 4e-28
seq197127 122 1e-22
seq198484 87.8 2e-12
seq197639 87.8 2e-12
seq197886 84.2 2e-11
>seq198569
Length=8129
Score = 237 bits (262), Expect = 2e-57
Identities = 327/453 (72%), Gaps = 16/453 (4%)
Strand=Plus/Plus
Query 170993 TACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTA 171052
|| |||||| | |||||||||| | | | | || ||| |||||||||| |||
Sbjct 2780 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGACCTTGGATTGCTGTT 2839
Query 171053 GCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAG 171112
||||| ||||| ||||| | || || ||| || ||| | | |||||| | |||||
Sbjct 2840 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAA 2899
Query 171113 GGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTG 171172
|| || |||||||| ||||| ||||| ||||| ||||| |||||||||||| ||||
Sbjct 2900 GGAAGTTTTTCTGATGGGATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATCGTA 2959
Query 171173 TTCCAAGCAGAACACAACATACTAATGCACCC-CTTCCATATGGCAGGTGTAGCAGGTAT 171231
||||| || || ||||| || || |||||||| ||| ||||| ||||||||| ||| |
Sbjct 2960 TTCCAGGCTGAGCACAATATCCTTATGCACCCATTTCGATATGTTAGGTGTAGCTGGTGT 3019
Query 171232 GTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAG 171291
|| | || ||| |||| ||| ||||| ||||| || || | || |||||||||
Sbjct 3020 ATTGGACGGCTCTCTATTCAATGCTATGCATGGTTC-CT--TGGTAGCT--TCTAATCAG 3074
Query 171292 AGAGACAACTGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAAC 171351
|| || || || | | || || || | || || ||||| || |||||
Sbjct 3075 GGAAACCAC----CCCGCTAATGAA------GGGTACAGATTTGGTCAAGAGGAGGAAAC 3124
Query 171352 ATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATT 171411
||||| ||||| ||||||||||| || || || |||| |||||||| ||||| ||
Sbjct 3125 TTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 3184
Query 171412 CAACAACTCTCGTTCATTACACTTCTTCCTCGC 171444
||||||||||||||| ||||| || ||||| ||
Sbjct 3185 CAACAACTCTCGTTCTTTACATTTTTTCCTAGC 3217
>seq199332
Length=2940
Score = 183 bits (202), Expect = 3e-41
Identities = 321/467 (69%), Gaps = 3/467 (1%)
Strand=Plus/Minus
Query 171795 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 171854
||||| || | ||||| |||||| |||||| |||||||| || | || ||||| |||
Sbjct 2537 TTTGATATTATGGATGACTGGTTACGGAGAGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 2478
Query 171855 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 171914
|| || || || ||||||| || | || | ||||||||||| ||| || || ||
Sbjct 2477 CTATTGCTCTTTTCTTGTGCCTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTT 2418
Query 171915 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTA 171974
|| || |||||||| ||||| || | || || ||| | ||||| ||||| |||
Sbjct 2417 GTAACTTCATGGTATACACACGGATTGGCGAGTTCCTATTTGGAGGGCTGCAACTTCTTA 2358
Query 171975 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGGGGA 172034
|| || ||||| || || |||| | || | | | | | | ||||| ||||||||
Sbjct 2357 ACCGCGGCAGTTTCTACTCCTGCTAATAGTTTACTTTACTCTTTGTTGTTACTATGGGGT 2298
Query 172035 CCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 172094
|| || |||||||| ||| || || |||| ||||||||| || || |||| |||||
Sbjct 2297 CCAGAAGCACAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACGTTTGTT 2238
Query 172095 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTT---AGACAGTTTGAGATTGCA 172151
|| | || || | |||||||| ||||||| | | | || || ||||| ||||
Sbjct 2237 GCTCTCCACGGCGCTTTTGGACTAATAGGTTGGTTTCATTAAAGTCAATTTGAACTTGCT 2178
Query 172152 GGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTC 172211
|| |||| | || ||||| || ||| | |||||||| || ||||| || ||
Sbjct 2177 CGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCGGTTTTT 2118
Query 172212 ACGAGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTT 172258
| || || || ||||| |||||||| | ||||||||||
Sbjct 2117 GTTTCTGTATTCCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTT 2071
>seq197706
Length=393
Score = 140 bits (154), Expect = 4e-28
Identities = 205/290 (71%), Gaps = 9/290 (3%)
Strand=Plus/Plus
Query 170702 TACGTTGGTTGGTTTGGTGTCTTAATGATCCC-ATGT--------CTTCTAACTGCTGCT 170752
||| |||| |||| |||||| || |||||||| | | || ||||||| ||
Sbjct 78 TACATTGGATGGTATGGTGTTTTGATGATCCCTACGGACCCCACCCTATTAACTGCAACT 137
Query 170753 GCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAA 170812
|| || ||| | || ||||| |||||||||||||||||||| || || || | |||
Sbjct 138 TCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTCGATATTGATGGTATTCGTGAA 197
Query 170813 CCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCT 170872
|| ||| | || ||| | | ||||| ||||| || ||||| ||||| | |||| ||
Sbjct 198 CCTGTTTCTGGGTCTCTACTTTATGGGAACAATATTATCTCAGGTGCCATTATTCCTACT 257
Query 170873 TCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGG 170932
|| || ||||| || ||||| || || || |||||||| || | | || || |||
Sbjct 258 TCTGCAGCTATAGGCTTGCACTTTTACCCGATATGGGAAGCTGCATCCGTTGATGAATGG 317
Query 170933 TTGTACAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGG 170982
|| ||||| || |||||||| || || || || | |||||| | ||||
Sbjct 318 TTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGG 367
>seq197127
Length=16832
Score = 122 bits (134), Expect = 1e-22
Identities = 121/156 (78%), Gaps = 2/156 (1%)
Strand=Plus/Minus
Query 171082 TGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGG 171141
||| || ||| | | |||||| | ||||| || || |||||||| ||||| |||||
Sbjct 16831 TGCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTAGG 16772
Query 171142 TATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCA 171201
||||| ||||| |||||||||||| |||| ||||| || || ||||| || || |||||
Sbjct 16771 AATCTCTGGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATGCA 16712
Query 171202 CCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGG 171237
||| || || ||| ||||||||| || |||||||
Sbjct 16711 CCCATTTCACATGTTAGGTGTAGCTGG--TGTTCGG 16678
>seq198484
Length=6561
Score = 87.8 bits (96), Expect = 2e-12
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 171563 ACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAAT 171622
|| |||| ||| | ||||| | || |||||||| |||||||||||||||||| | |||
Sbjct 6288 ACCTGGGCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 6347
Query 171623 GCACACAACTTCCCACTAGACCTAGC 171648
|| || |||||||| |||||||||||
Sbjct 6348 GCTCATAACTTCCCTCTAGACCTAGC 6373
>seq197639
Length=228
Score = 87.8 bits (96), Expect = 2e-12
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 171563 ACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAAT 171622
|| |||| ||| | ||||| | || |||||||| |||||||||||||||||| | |||
Sbjct 195 ACCTGGGCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 136
Query 171623 GCACACAACTTCCCACTAGACCTAGC 171648
|| || |||||||| |||||||||||
Sbjct 135 GCTCATAACTTCCCTCTAGACCTAGC 110
>seq197886
Length=1258
Score = 84.2 bits (92), Expect = 2e-11
Identities = 183/271 (68%), Gaps = 15/271 (6%)
Strand=Plus/Plus
Query 171387 GATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTG 171446
|||| |||||||| |||| | || || || |||| || ||||| |||||||| |||
Sbjct 338 GATTGATCTTCCAATATGTTACTTTTAATAATTCTCATTTTTTACATTTCTTCCTAACTG 397
Query 171447 TATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACC 171506
| | |||||| | || | | ||| | | | ||||| | |||| ||||||
Sbjct 398 TTTGGCCTGTAATAGGTATCTAGTTCATTGTTTTAGGTATTAGCGTTGTGGCTGTCAACC 457
Query 171507 TTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGAT--TGTA---CC 171561
| || || || || ||||||||||| || || ||| || | ||| | ||||
Sbjct 458 TAAATGGTTTGAATTTCAACCAATCCGTAGTTGAT--AATC---AAGGTCGTGTAATTAA 512
Query 171562 AACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGT-----TATGCATGAA 171616
|| |||| ||| | ||||| || ||| |||| | | |||| ||| ||||||
Sbjct 513 GACTTGGGCTGATATCATTAACCATGCTAACTTTGGTACGAAAGTTGGAGTATTCATGAA 572
Query 171617 AGAAATGCACACAACTTCCCACTAGACCTAG 171647
| ||||| || |||||||| ||||||||||
Sbjct 573 CGTAATGCTCATAACTTCCCTCTAGACCTAG 603
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 568841680942920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |