Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq198569 237 2e-57 seq199332 183 3e-41 seq197706 140 4e-28 seq197127 122 1e-22 seq198484 87.8 2e-12 seq197639 87.8 2e-12 seq197886 84.2 2e-11 >seq198569 Length=8129 Score = 237 bits (262), Expect = 2e-57 Identities = 327/453 (72%), Gaps = 16/453 (4%) Strand=Plus/Plus Query 170993 TACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTA 171052 || |||||| | |||||||||| | | | | || ||| |||||||||| ||| Sbjct 2780 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGACCTTGGATTGCTGTT 2839 Query 171053 GCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAG 171112 ||||| ||||| ||||| | || || ||| || ||| | | |||||| | ||||| Sbjct 2840 GCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAA 2899 Query 171113 GGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTG 171172 || || |||||||| ||||| ||||| ||||| ||||| |||||||||||| |||| Sbjct 2900 GGAAGTTTTTCTGATGGGATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATCGTA 2959 Query 171173 TTCCAAGCAGAACACAACATACTAATGCACCC-CTTCCATATGGCAGGTGTAGCAGGTAT 171231 ||||| || || ||||| || || |||||||| ||| ||||| ||||||||| ||| | Sbjct 2960 TTCCAGGCTGAGCACAATATCCTTATGCACCCATTTCGATATGTTAGGTGTAGCTGGTGT 3019 Query 171232 GTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAG 171291 || | || ||| |||| ||| ||||| ||||| || || | || ||||||||| Sbjct 3020 ATTGGACGGCTCTCTATTCAATGCTATGCATGGTTC-CT--TGGTAGCT--TCTAATCAG 3074 Query 171292 AGAGACAACTGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAAC 171351 || || || || | | || || || | || || ||||| || ||||| Sbjct 3075 GGAAACCAC----CCCGCTAATGAA------GGGTACAGATTTGGTCAAGAGGAGGAAAC 3124 Query 171352 ATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATT 171411 ||||| ||||| ||||||||||| || || || |||| |||||||| ||||| || Sbjct 3125 TTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 3184 Query 171412 CAACAACTCTCGTTCATTACACTTCTTCCTCGC 171444 ||||||||||||||| ||||| || ||||| || Sbjct 3185 CAACAACTCTCGTTCTTTACATTTTTTCCTAGC 3217 >seq199332 Length=2940 Score = 183 bits (202), Expect = 3e-41 Identities = 321/467 (69%), Gaps = 3/467 (1%) Strand=Plus/Minus Query 171795 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 171854 ||||| || | ||||| |||||| |||||| |||||||| || | || ||||| ||| Sbjct 2537 TTTGATATTATGGATGACTGGTTACGGAGAGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 2478 Query 171855 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 171914 || || || || ||||||| || | || | ||||||||||| ||| || || || Sbjct 2477 CTATTGCTCTTTTCTTGTGCCTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTT 2418 Query 171915 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTA 171974 || || |||||||| ||||| || | || || ||| | ||||| ||||| ||| Sbjct 2417 GTAACTTCATGGTATACACACGGATTGGCGAGTTCCTATTTGGAGGGCTGCAACTTCTTA 2358 Query 171975 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGGGGA 172034 || || ||||| || || |||| | || | | | | | | ||||| |||||||| Sbjct 2357 ACCGCGGCAGTTTCTACTCCTGCTAATAGTTTACTTTACTCTTTGTTGTTACTATGGGGT 2298 Query 172035 CCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 172094 || || |||||||| ||| || || |||| ||||||||| || || |||| ||||| Sbjct 2297 CCAGAAGCACAAGGCGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACGTTTGTT 2238 Query 172095 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTT---AGACAGTTTGAGATTGCA 172151 || | || || | |||||||| ||||||| | | | || || ||||| |||| Sbjct 2237 GCTCTCCACGGCGCTTTTGGACTAATAGGTTGGTTTCATTAAAGTCAATTTGAACTTGCT 2178 Query 172152 GGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTC 172211 || |||| | || ||||| || ||| | |||||||| || ||||| || || Sbjct 2177 CGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCGGTTTTT 2118 Query 172212 ACGAGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTT 172258 | || || || ||||| |||||||| | |||||||||| Sbjct 2117 GTTTCTGTATTCCTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTT 2071 >seq197706 Length=393 Score = 140 bits (154), Expect = 4e-28 Identities = 205/290 (71%), Gaps = 9/290 (3%) Strand=Plus/Plus Query 170702 TACGTTGGTTGGTTTGGTGTCTTAATGATCCC-ATGT--------CTTCTAACTGCTGCT 170752 ||| |||| |||| |||||| || |||||||| | | || ||||||| || Sbjct 78 TACATTGGATGGTATGGTGTTTTGATGATCCCTACGGACCCCACCCTATTAACTGCAACT 137 Query 170753 GCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAA 170812 || || ||| | || ||||| |||||||||||||||||||| || || || | ||| Sbjct 138 TCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTCGATATTGATGGTATTCGTGAA 197 Query 170813 CCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCT 170872 || ||| | || ||| | | ||||| ||||| || ||||| ||||| | |||| || Sbjct 198 CCTGTTTCTGGGTCTCTACTTTATGGGAACAATATTATCTCAGGTGCCATTATTCCTACT 257 Query 170873 TCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGG 170932 || || ||||| || ||||| || || || |||||||| || | | || || ||| Sbjct 258 TCTGCAGCTATAGGCTTGCACTTTTACCCGATATGGGAAGCTGCATCCGTTGATGAATGG 317 Query 170933 TTGTACAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGG 170982 || ||||| || |||||||| || || || || | |||||| | |||| Sbjct 318 TTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGG 367 >seq197127 Length=16832 Score = 122 bits (134), Expect = 1e-22 Identities = 121/156 (78%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 171082 TGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGG 171141 ||| || ||| | | |||||| | ||||| || || |||||||| ||||| ||||| Sbjct 16831 TGCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGTTTTTCTGATGGGATGCCTCTAGG 16772 Query 171142 TATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCA 171201 ||||| ||||| |||||||||||| |||| ||||| || || ||||| || || ||||| Sbjct 16771 AATCTCTGGTACTTTCAACTTCATGATCGTATTCCAGGCTGAGCACAATATCCTTATGCA 16712 Query 171202 CCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGG 171237 ||| || || ||| ||||||||| || ||||||| Sbjct 16711 CCCATTTCACATGTTAGGTGTAGCTGG--TGTTCGG 16678 >seq198484 Length=6561 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 171563 ACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAAT 171622 || |||| ||| | ||||| | || |||||||| |||||||||||||||||| | ||| Sbjct 6288 ACCTGGGCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 6347 Query 171623 GCACACAACTTCCCACTAGACCTAGC 171648 || || |||||||| ||||||||||| Sbjct 6348 GCTCATAACTTCCCTCTAGACCTAGC 6373 >seq197639 Length=228 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 171563 ACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAAT 171622 || |||| ||| | ||||| | || |||||||| |||||||||||||||||| | ||| Sbjct 195 ACCTGGGCCGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 136 Query 171623 GCACACAACTTCCCACTAGACCTAGC 171648 || || |||||||| ||||||||||| Sbjct 135 GCTCATAACTTCCCTCTAGACCTAGC 110 >seq197886 Length=1258 Score = 84.2 bits (92), Expect = 2e-11 Identities = 183/271 (68%), Gaps = 15/271 (6%) Strand=Plus/Plus Query 171387 GATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTG 171446 |||| |||||||| |||| | || || || |||| || ||||| |||||||| ||| Sbjct 338 GATTGATCTTCCAATATGTTACTTTTAATAATTCTCATTTTTTACATTTCTTCCTAACTG 397 Query 171447 TATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACC 171506 | | |||||| | || | | ||| | | | ||||| | |||| |||||| Sbjct 398 TTTGGCCTGTAATAGGTATCTAGTTCATTGTTTTAGGTATTAGCGTTGTGGCTGTCAACC 457 Query 171507 TTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGAT--TGTA---CC 171561 | || || || || ||||||||||| || || ||| || | ||| | |||| Sbjct 458 TAAATGGTTTGAATTTCAACCAATCCGTAGTTGAT--AATC---AAGGTCGTGTAATTAA 512 Query 171562 AACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGT-----TATGCATGAA 171616 || |||| ||| | ||||| || ||| |||| | | |||| ||| |||||| Sbjct 513 GACTTGGGCTGATATCATTAACCATGCTAACTTTGGTACGAAAGTTGGAGTATTCATGAA 572 Query 171617 AGAAATGCACACAACTTCCCACTAGACCTAG 171647 | ||||| || |||||||| |||||||||| Sbjct 573 CGTAATGCTCATAACTTCCCTCTAGACCTAG 603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568841680942920