Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq197427 159 4e-34 seq190796 95.1 2e-14 seq180626 86.0 8e-12 seq181835 82.4 9e-11 >seq197427 Length=19924 Score = 159 bits (176), Expect = 4e-34 Identities = 586/911 (64%), Gaps = 15/911 (2%) Strand=Plus/Plus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 || ||||| || || || | || |||||||| || || || || | ||| || Sbjct 13670 TTCTGGTACTCTCCAACCCTCTTCTCGAAAAAGTTTGTCTTCCCCTGCAAACTGATCAGC 13729 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 ||||| ||||||||||||| | ||| || |||||| | | ||||| || | | Sbjct 13730 TCCATCCAATCAAACGGATTCTTCGCATCGTACATTTTTCCATACCCCAAAGCACCCAAC 13789 Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192 | ||||| ||||||||||| |||||| |||||| || | |||||| || | || Sbjct 13790 AGCCTATCAGCGACGAATTCAATATATTGGCTCATCAAATCGCCATTCATGCCCACCAGA 13849 Query 33193 TTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAA 33250 | || || || ||||| | ||| || || || |||||||| | | || Sbjct 13850 GCACACGGCAGCGCGTCGCAG--ACAAACTCCCTCTCGATCTCCACCGCATCGGCCACAA 13907 Query 33251 TAGATCTAACGGTTTCTTCACTCGGTGGATG---CAATAAATGTTTAAACATCAAACATG 33307 | || || || || ||| | || || || | | ||| ||| || | Sbjct 13908 TTCCCCTGACTCGCTCCTCGCTCAGCTTCTGAGTCAGCAACTCGT---ACAGCAAGCAGG 13964 Query 33308 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGG 33367 | ||||||||||||| || |||||||| || | |||||||| || || | || | Sbjct 13965 CAAAATCGCAGTGCAAGCCTTCGTCTCTTGAGATCAACTCGTTGGAGAAGGTCAACCCAG 14024 Query 33368 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTC 33427 |||| | || |||||||| ||||| || || | ||| || || ||||| || | Sbjct 14025 GCATCAACCCGCGCTTTTTGAGCCAGAAGATCGCGCAGAAGCTCCCGGAGAAGAAAATCC 14084 Query 33428 CTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACT 33487 |||| || ||||||||||| | || ||| | || ||| | | ||||||| Sbjct 14085 CTTCGACGCAAGCAAAGGCAACGATTCGCTCGGCGAAAGACTCGCCACCGTCGATCCACT 14144 Query 33488 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 33547 | | ||||| | ||||||||||| || ||||| ||||| || || || | || || Sbjct 14145 TGAGGGCCCACTTGGCCTTCTTTTCCACGCAAGGGATCGTCTCGATCGCGTGGAAAAGCC 14204 Query 33548 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 33607 || || || ||| ||| || | || | |||| ||| || || |||||||| || | Sbjct 14205 GGTCCTTCTCGTTAGAATCCTTGATGTACGACTCGAGCAAGAGGCTGTACATTTCGGAGT 14264 Query 33608 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTT 33667 | ||||| || ||||| || || || ||||| || ||| ||||| | | ||| || | Sbjct 14265 GGATGTTCTCGATGGCGATTTGGAAGCCGTAAAAGGCTCTGGCCTCAGCTACCTGGACCT 14324 Query 33668 CTGTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 33726 | | || | | | || |||| || || || || |||||| ||| || || || Sbjct 14325 C-CTTCATGAACCTGCCGGCCAGGTTCTCCAAGACGATACCGTCAGAGGCGGCGAAGAAG 14383 Query 33727 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG---TTTATTCCAATCATTG 33783 || | || || | || || | | ||||| || || || | ||| | | Sbjct 14384 GCGAGGACGTGGGTGATGAAGTGTCGCTCGTCGTCGGTCAGGGTTTCCTCCCAGTGGCGG 14443 Query 33784 ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 33843 | || || | ||| |||||||| | ||||| || || || ||||| || || ||| Sbjct 14444 AGGTCGGAGGAGAGATCGACTTCTTCAGCCGTCCAGAAGGAGGCTTCTGCTTTCTTGTAC 14503 Query 33844 ATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCA 33903 || | |||||| | || | |||||| || || || | || ||| ||||| | Sbjct 14504 ATTTCCCAGATTTGTGGGTACTTGATTGGAAACATGCAGAAGCGATCTGGGTTTGGCGTC 14563 Query 33904 AGGATGGGTTC 33914 |||| |||||| Sbjct 14564 AGGAGGGGTTC 14574 >seq190796 Length=8466 Score = 95.1 bits (104), Expect = 2e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || || |||||||||||||||||||||||| ||| ||||| || || || || | Sbjct 3084 CAAGCAAAGTCGCAGTGCAGACCCTCGTCTCTAGAAATAAGTTCATTTGAGAATGTCAAG 3143 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG 33400 || ||||| || || | |||||||||||||||||||| Sbjct 3144 CCTGGCATCAGTCCCCTCTTTTTAAGCCAAAATATGG 3180 >seq180626 Length=5659 Score = 86.0 bits (94), Expect = 8e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63372 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63431 || || ||||| | || | || |||| |||| |||||| | |||||||| | ||| Sbjct 2941 CCCCCTTGATCAACATAACGGGCAGTGTCATTAAAAACTCGTAGCATTGGAACCACACCA 2882 Query 63432 TTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63491 |||||| | ||||| || || |||||| || || |||||||||||||| || || Sbjct 2881 TTTGATGTCCCATTTGTTCCACGGATATAACTCCCTGTGGCACGAATATTATGAACAGAG 2822 Query 63492 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATA 63551 | || ||||| || || || ||| | || || || || || |||||||| Sbjct 2821 ACTCCGATTCCTCCAGCAGACTTGCTGATAACAGCACACTCCTTCAAAGTATCATAGATT 2762 Query 63552 CCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593 || || ||||| ||||| ||||| | | ||| |||||| Sbjct 2761 CCTTCAATGCTGTCATCTTTCATGCACACCAAAAAGCAGCTA 2720 >seq181835 Length=5898 Score = 82.4 bits (90), Expect = 9e-11 Identities = 121/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 63113 TCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGG 63172 |||||| ||| | | || | | ||| || || || |||||| || | || || || Sbjct 4032 TCTTTCATATTGGGCGTAAAGTTTTTCAAAATCTTCACCCCAACAATCAGCTAAGCCTGG 3973 Query 63173 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGA 63231 | |||| ||||| | ||| ||||| || | | | |||||| ||| ||||||||| | Sbjct 3972 AGCCTCATTTGGACAAAACAAAGACCATTCCCTATTA-CCTTCAACTCTTTTCATAAAAA 3914 Query 63232 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTC 63280 ||||||| ||||||||||| ||||||||| |||| | ||| || || Sbjct 3913 GATCAGGTATCCAAAGAGCATAAAATAGATCCCTGGCCCGATGCTCTTC 3865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621388251271480