Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq197427 159 4e-34
seq190796 95.1 2e-14
seq180626 86.0 8e-12
seq181835 82.4 9e-11
>seq197427
Length=19924
Score = 159 bits (176), Expect = 4e-34
Identities = 586/911 (64%), Gaps = 15/911 (2%)
Strand=Plus/Plus
Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072
|| ||||| || || || | || |||||||| || || || || | ||| ||
Sbjct 13670 TTCTGGTACTCTCCAACCCTCTTCTCGAAAAAGTTTGTCTTCCCCTGCAAACTGATCAGC 13729
Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132
||||| ||||||||||||| | ||| || |||||| | | ||||| || | |
Sbjct 13730 TCCATCCAATCAAACGGATTCTTCGCATCGTACATTTTTCCATACCCCAAAGCACCCAAC 13789
Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192
| ||||| ||||||||||| |||||| |||||| || | |||||| || | ||
Sbjct 13790 AGCCTATCAGCGACGAATTCAATATATTGGCTCATCAAATCGCCATTCATGCCCACCAGA 13849
Query 33193 TTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAA 33250
| || || || ||||| | ||| || || || |||||||| | | ||
Sbjct 13850 GCACACGGCAGCGCGTCGCAG--ACAAACTCCCTCTCGATCTCCACCGCATCGGCCACAA 13907
Query 33251 TAGATCTAACGGTTTCTTCACTCGGTGGATG---CAATAAATGTTTAAACATCAAACATG 33307
| || || || || ||| | || || || | | ||| ||| || |
Sbjct 13908 TTCCCCTGACTCGCTCCTCGCTCAGCTTCTGAGTCAGCAACTCGT---ACAGCAAGCAGG 13964
Query 33308 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGG 33367
| ||||||||||||| || |||||||| || | |||||||| || || | || |
Sbjct 13965 CAAAATCGCAGTGCAAGCCTTCGTCTCTTGAGATCAACTCGTTGGAGAAGGTCAACCCAG 14024
Query 33368 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTC 33427
|||| | || |||||||| ||||| || || | ||| || || ||||| || |
Sbjct 14025 GCATCAACCCGCGCTTTTTGAGCCAGAAGATCGCGCAGAAGCTCCCGGAGAAGAAAATCC 14084
Query 33428 CTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACT 33487
|||| || ||||||||||| | || ||| | || ||| | | |||||||
Sbjct 14085 CTTCGACGCAAGCAAAGGCAACGATTCGCTCGGCGAAAGACTCGCCACCGTCGATCCACT 14144
Query 33488 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 33547
| | ||||| | ||||||||||| || ||||| ||||| || || || | || ||
Sbjct 14145 TGAGGGCCCACTTGGCCTTCTTTTCCACGCAAGGGATCGTCTCGATCGCGTGGAAAAGCC 14204
Query 33548 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 33607
|| || || ||| ||| || | || | |||| ||| || || |||||||| || |
Sbjct 14205 GGTCCTTCTCGTTAGAATCCTTGATGTACGACTCGAGCAAGAGGCTGTACATTTCGGAGT 14264
Query 33608 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTT 33667
| ||||| || ||||| || || || ||||| || ||| ||||| | | ||| || |
Sbjct 14265 GGATGTTCTCGATGGCGATTTGGAAGCCGTAAAAGGCTCTGGCCTCAGCTACCTGGACCT 14324
Query 33668 CTGTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 33726
| | || | | | || |||| || || || || |||||| ||| || || ||
Sbjct 14325 C-CTTCATGAACCTGCCGGCCAGGTTCTCCAAGACGATACCGTCAGAGGCGGCGAAGAAG 14383
Query 33727 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG---TTTATTCCAATCATTG 33783
|| | || || | || || | | ||||| || || || | ||| | |
Sbjct 14384 GCGAGGACGTGGGTGATGAAGTGTCGCTCGTCGTCGGTCAGGGTTTCCTCCCAGTGGCGG 14443
Query 33784 ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 33843
| || || | ||| |||||||| | ||||| || || || ||||| || || |||
Sbjct 14444 AGGTCGGAGGAGAGATCGACTTCTTCAGCCGTCCAGAAGGAGGCTTCTGCTTTCTTGTAC 14503
Query 33844 ATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCA 33903
|| | |||||| | || | |||||| || || || | || ||| ||||| |
Sbjct 14504 ATTTCCCAGATTTGTGGGTACTTGATTGGAAACATGCAGAAGCGATCTGGGTTTGGCGTC 14563
Query 33904 AGGATGGGTTC 33914
|||| ||||||
Sbjct 14564 AGGAGGGGTTC 14574
>seq190796
Length=8466
Score = 95.1 bits (104), Expect = 2e-14
Identities = 79/97 (81%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363
|| || || |||||||||||||||||||||||| ||| ||||| || || || || |
Sbjct 3084 CAAGCAAAGTCGCAGTGCAGACCCTCGTCTCTAGAAATAAGTTCATTTGAGAATGTCAAG 3143
Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG 33400
|| ||||| || || | ||||||||||||||||||||
Sbjct 3144 CCTGGCATCAGTCCCCTCTTTTTAAGCCAAAATATGG 3180
>seq180626
Length=5659
Score = 86.0 bits (94), Expect = 8e-12
Identities = 152/222 (68%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 63372 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63431
|| || ||||| | || | || |||| |||| |||||| | |||||||| | |||
Sbjct 2941 CCCCCTTGATCAACATAACGGGCAGTGTCATTAAAAACTCGTAGCATTGGAACCACACCA 2882
Query 63432 TTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63491
|||||| | ||||| || || |||||| || || |||||||||||||| || ||
Sbjct 2881 TTTGATGTCCCATTTGTTCCACGGATATAACTCCCTGTGGCACGAATATTATGAACAGAG 2822
Query 63492 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATA 63551
| || ||||| || || || ||| | || || || || || ||||||||
Sbjct 2821 ACTCCGATTCCTCCAGCAGACTTGCTGATAACAGCACACTCCTTCAAAGTATCATAGATT 2762
Query 63552 CCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593
|| || ||||| ||||| ||||| | | ||| ||||||
Sbjct 2761 CCTTCAATGCTGTCATCTTTCATGCACACCAAAAAGCAGCTA 2720
>seq181835
Length=5898
Score = 82.4 bits (90), Expect = 9e-11
Identities = 121/169 (72%), Gaps = 2/169 (1%)
Strand=Plus/Minus
Query 63113 TCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGG 63172
|||||| ||| | | || | | ||| || || || |||||| || | || || ||
Sbjct 4032 TCTTTCATATTGGGCGTAAAGTTTTTCAAAATCTTCACCCCAACAATCAGCTAAGCCTGG 3973
Query 63173 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGA 63231
| |||| ||||| | ||| ||||| || | | | |||||| ||| ||||||||| |
Sbjct 3972 AGCCTCATTTGGACAAAACAAAGACCATTCCCTATTA-CCTTCAACTCTTTTCATAAAAA 3914
Query 63232 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTC 63280
||||||| ||||||||||| ||||||||| |||| | ||| || ||
Sbjct 3913 GATCAGGTATCCAAAGAGCATAAAATAGATCCCTGGCCCGATGCTCTTC 3865
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 621388251271480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |