Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq194317 104 2e-17 seq188063 98.7 9e-16 seq155647 93.3 4e-14 seq93507 87.8 2e-12 seq116321 84.2 2e-11 >seq194317 Length=10706 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| ||||| || ||| | || ||| | || | ||||| Sbjct 1535 AAGATGCAGATCTTCGTCAAAACCTTAACCGGGAAAACCATAACCCTAGAGGTTGAATCC 1476 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||||||||| | |||||| |||||| ||||||||||| ||||| || || Sbjct 1475 TCTGACACCATCGACAATGTCAAAGCAAAGATCCAGGACAAAGAAGGCATACCACCAGAC 1416 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 ||||| | || || | || |||||| || || || || | |||| | |||||| Sbjct 1415 CAACAGCGCCTTATCTTCGCCGGCAAGCAGCTGGAGGACGGAAGAACTCTAGCCGACTAC 1356 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || ||||| || |||| || ||||| Sbjct 1355 AACATCCAGAAGGAATCCACGCTCCACCTCGTCCT 1321 >seq188063 Length=7454 Score = 98.7 bits (108), Expect = 9e-16 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || |||||||| | |||||| ||||| ||||| |||||||| || || || || Sbjct 676 GATACCATCGATAACGTCAAAGCTAAGATCCAAGACAAGGAAGGGATTCCACCAGACCAG 617 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||||||||| | || ||| || |||||||| || | | | | | | ||| || ||| Sbjct 616 CAAAGACTCATCTTCGCCGGAAAGCAACTCGAGGACGGTCGTACCCTTGCCGATTACAAC 557 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| ||||| || ||||| ||||||| | || ||||| || Sbjct 556 ATCCAAAAGGAATCCACCCTCCATTTGGTCCTCCGTCTCAGAGGTGG 510 >seq155647 Length=3035 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 |||||||| | || || ||||| |||| || || | || || |||| | ||||| Sbjct 2007 AAAATGCAGATCTTCGTCAAAACCCTAACGGGTAAGACCATAACTCTCGAGGTTGAATCC 2066 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||||||||| | ||||| ||||| ||||| ||||| || || || || Sbjct 2067 TCGGACACCATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCACCGGAC 2126 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || ||| | ||||| | || |||||||| ||||| || | | | | | | |||||| Sbjct 2127 CAGCAACGCCTCATCTTCGCTGGCAAACAGCTCGAGGACGGTCGGACCCTAGCCGACTAC 2186 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 ||||| || || || || || | || ||||| ||| | || ||||| ||| Sbjct 2187 AACATCCAGAAGGAGTCGACGCTTCACCTGGTGCTGCGCCTCAGAGGTGGA 2237 >seq93507 Length=917 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||| |||||||| | ||||| ||||| ||||| |||||||| || || || || Sbjct 772 CGATACCATCGATAACGTCAACGCTAAGATCCAAGACAAGGAAGGGATTCCACCAGACCA 713 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||||||||||| | || ||| || ||||| || || | | | | | ||| || || Sbjct 712 GCAAAGACTCATCTTCGCCGGAAAGCAACTTGAGGACGGCCGTACCCTTGCCGATTACAA 653 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| ||||| ||||| || ||||| ||||||| | || ||||| || Sbjct 652 CATCCAAAAGGAATCCACCCTCCATTTGGTCCTTCGTCTCAGAGGTGG 605 >seq116321 Length=1411 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATT--AGAATCAA 26826 ||||| | ||||| ||||| | || ||||| | || ||| | || | ||| | | Sbjct 636 ATGCAGATCTTTGTGAAAACCCTCACCGGAAAGACTATTACCTTGGAGGTCGAGAGTTCA 695 Query 26827 ACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATC 26886 ||||||||||| | || || |||||| |||||||| ||||| || || || | Sbjct 696 --GACACCATCGATAACGTGAAGGCTAAGATTCAAGACAAAGAGGGGATCCCACCAGACC 753 Query 26887 AACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATA 26946 | || || ||||| | || ||| ||||| ||||| |||| | | | || |||||| | Sbjct 754 AGCAGAGGCTCATCTTCGCCGGAAAACAGCTCGAGGATGGCCGTACCCTCGCCGACTACA 813 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 | || || || || || ||| ||||| |||| || Sbjct 814 ATATCCAGAAGGAGTCAACTCTCCATTTGGTGCT 847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477464529394160