Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq194317 104 2e-17
seq188063 98.7 9e-16
seq155647 93.3 4e-14
seq93507 87.8 2e-12
seq116321 84.2 2e-11
>seq194317
Length=10706
Score = 104 bits (114), Expect = 2e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825
|| ||||| | || || ||||| ||||| || ||| | || ||| | || | |||||
Sbjct 1535 AAGATGCAGATCTTCGTCAAAACCTTAACCGGGAAAACCATAACCCTAGAGGTTGAATCC 1476
Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885
||||||||||| | |||||| |||||| ||||||||||| ||||| || ||
Sbjct 1475 TCTGACACCATCGACAATGTCAAAGCAAAGATCCAGGACAAAGAAGGCATACCACCAGAC 1416
Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945
||||| | || || | || |||||| || || || || | |||| | ||||||
Sbjct 1415 CAACAGCGCCTTATCTTCGCCGGCAAGCAGCTGGAGGACGGAAGAACTCTAGCCGACTAC 1356
Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
||||| || || ||||| || |||| || |||||
Sbjct 1355 AACATCCAGAAGGAATCCACGCTCCACCTCGTCCT 1321
>seq188063
Length=7454
Score = 98.7 bits (108), Expect = 9e-16
Identities = 122/167 (73%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|| |||||||| | |||||| ||||| ||||| |||||||| || || || ||
Sbjct 676 GATACCATCGATAACGTCAAAGCTAAGATCCAAGACAAGGAAGGGATTCCACCAGACCAG 617
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
||||||||||| | || ||| || |||||||| || | | | | | | ||| || |||
Sbjct 616 CAAAGACTCATCTTCGCCGGAAAGCAACTCGAGGACGGTCGTACCCTTGCCGATTACAAC 557
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
|| ||||| ||||| || ||||| ||||||| | || ||||| ||
Sbjct 556 ATCCAAAAGGAATCCACCCTCCATTTGGTCCTCCGTCTCAGAGGTGG 510
>seq155647
Length=3035
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825
|||||||| | || || ||||| |||| || || | || || |||| | |||||
Sbjct 2007 AAAATGCAGATCTTCGTCAAAACCCTAACGGGTAAGACCATAACTCTCGAGGTTGAATCC 2066
Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885
||||||||||| | ||||| ||||| ||||| ||||| || || || ||
Sbjct 2067 TCGGACACCATCGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCACCGGAC 2126
Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945
|| ||| | ||||| | || |||||||| ||||| || | | | | | | ||||||
Sbjct 2127 CAGCAACGCCTCATCTTCGCTGGCAAACAGCTCGAGGACGGTCGGACCCTAGCCGACTAC 2186
Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996
||||| || || || || || | || ||||| ||| | || ||||| |||
Sbjct 2187 AACATCCAGAAGGAGTCGACGCTTCACCTGGTGCTGCGCCTCAGAGGTGGA 2237
>seq93507
Length=917
Score = 87.8 bits (96), Expect = 2e-12
Identities = 120/168 (71%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887
||| |||||||| | ||||| ||||| ||||| |||||||| || || || ||
Sbjct 772 CGATACCATCGATAACGTCAACGCTAAGATCCAAGACAAGGAAGGGATTCCACCAGACCA 713
Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947
||||||||||| | || ||| || ||||| || || | | | | | ||| || ||
Sbjct 712 GCAAAGACTCATCTTCGCCGGAAAGCAACTTGAGGACGGCCGTACCCTTGCCGATTACAA 653
Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
||| ||||| ||||| || ||||| ||||||| | || ||||| ||
Sbjct 652 CATCCAAAAGGAATCCACCCTCCATTTGGTCCTTCGTCTCAGAGGTGG 605
>seq116321
Length=1411
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/214 (69%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATT--AGAATCAA 26826
||||| | ||||| ||||| | || ||||| | || ||| | || | ||| | |
Sbjct 636 ATGCAGATCTTTGTGAAAACCCTCACCGGAAAGACTATTACCTTGGAGGTCGAGAGTTCA 695
Query 26827 ACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATC 26886
||||||||||| | || || |||||| |||||||| ||||| || || || |
Sbjct 696 --GACACCATCGATAACGTGAAGGCTAAGATTCAAGACAAAGAGGGGATCCCACCAGACC 753
Query 26887 AACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATA 26946
| || || ||||| | || ||| ||||| ||||| |||| | | | || |||||| |
Sbjct 754 AGCAGAGGCTCATCTTCGCCGGAAAACAGCTCGAGGATGGCCGTACCCTCGCCGACTACA 813
Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
| || || || || || ||| ||||| |||| ||
Sbjct 814 ATATCCAGAAGGAGTCAACTCTCCATTTGGTGCT 847
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 477464529394160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |