Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq194317 104 2e-17 seq156113 95.1 1e-14 seq194543 93.3 4e-14 seq160375 91.5 1e-13 seq176217 82.4 7e-11 seq116321 82.4 7e-11 >seq194317 Length=10706 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| ||||| || ||| | || ||| | || || || || Sbjct 1535 AAGATGCAGATCTTCGTCAAAACCTTAACCGGGAAAACCATAACCCTAGAGGTTGAATCC 1476 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||||||||||| | |||||| |||||| ||||||||||||||||| || || Sbjct 1475 TCTGACACCATCGACAATGTCAAAGCAAAGATCCAGGACAAAGAAGGCATACCACCAGAC 1416 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 |||||| | || || | || ||||||||| || || || | |||| | ||| || Sbjct 1415 CAACAGCGCCTTATCTTCGCCGGCAAGCAGCTGGAGGACGGAAGAACTCTAGCCGACTAC 1356 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||| || || ||||| || Sbjct 1355 AACATCCAGAAGGAATCCAC 1336 >seq156113 Length=3066 Score = 95.1 bits (104), Expect = 1e-14 Identities = 166/238 (70%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 23982 CCAAA-CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGT 24040 ||||| || ||||| | || || ||||| |||| || ||| | || ||| | ||||| Sbjct 876 CCAAATCAGGATGCAGATCTTCGTCAAAACCCTAACCGGCAAAACAATCACCTTGGAAGT 935 Query 24041 CGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACC 24100 |||| | ||| || ||||| | || || || || ||||| ||||| || || Sbjct 936 CGAGAGCTCCGATACTATCGACAATGTAAAGGCCAAAATCCAAGACAAGGAAGGGATTCC 995 Query 24101 TCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAG 24160 ||| ||||| ||| | |||||| || || |||||| | ||||||| ||| | | || Sbjct 996 TCCGGATCAGCAGCGGTTGATTTTCGCTGGTAAGCAATTGGAAGATGGGCGAACCCT-AG 1054 Query 24161 CG-ATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || |||||||||| || || || || || | ||| | ||| | || ||||| || || Sbjct 1055 CGGATTATAACATCCAGAAGGAGTCGACGTTGCATCTGGTGCTGAGGTTGAGGGGTGG 1112 >seq194543 Length=10949 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | ||||| || |||| || |||| ||||| | | Sbjct 3254 ATGCAGATCTTCGTCAAAACCCTGACTGGCAAGACGATCACGCTCGAGGTCGAAAGCTCC 3313 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| || || ||||| ||||| || ||||| ||||| Sbjct 3314 GACACTATCGACAACGTCAAGGCGAAAATCCAGGACAAGGAAGGTATCCCTCCAGATCAG 3373 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| || || | || || |||||||| ||||||| | | | | ||| |||||||| Sbjct 3374 CAGAGGCTAATCTTCGCTGGAAAGCAACTGGAAGATGGGCGGA-CTTTAGCCGATTATAA 3432 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||| || || ||||| || |||| |||| Sbjct 3433 CATCCAGAAGGAATCCACTCTTCACCTAGT 3462 >seq160375 Length=3367 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || || || ||| | || ||| | || || ||| | | Sbjct 696 ATGCAGATCTTTGTTAAGACCTTGACCGGCAAAACCATCACCTTGGAGGTTGAGAGCTCC 637 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| || || || || || ||||| Sbjct 636 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCACCGGATCAG 577 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | || ||| ||||| || ||||||| | | | | | ||||||||| Sbjct 576 CAGAGGCTCATCTTCGCCGGAAAGCAGCTTGAAGATGGCCGTACCTTGGCTGATTATAAC 517 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || || ||||| || | || || ||| Sbjct 516 ATCCAGAAGGAATCCACCCTACACTTGGTG 487 >seq176217 Length=4970 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || |||||| | || || | || ||||| | Sbjct 2746 ATGCAAATATTCGTGAAGACCCTGACAGGAAAAACCATCACTTTAGAGGTCGAAAGCTCT 2687 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | |||||| ||||| ||||| ||||| || || || || || Sbjct 2686 GACACAATTGATAACGTCAAAGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 2627 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || || |||| | ||||||||||||||| || | | | | | | |||||| || Sbjct 2626 CAAAGGCTTATTTTTGCCGGCAAGCAACTCGAGGACGGCCGTACCCTTGCCGATTACAAT 2567 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || ||||| ||||| || | ||||| ||| Sbjct 2566 ATCCAAAAGGAATCCACCCTCCATTTGGTG 2537 >seq116321 Length=1411 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | || ||||| | |||||| | || |||||| Sbjct 636 ATGCAGATCTTTGTGAAAACCCTCACCGGAAAGACTATTACCTTGGAGGTCGAGAGTTCA 695 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || |||||| |||||||| || || || || || || Sbjct 696 GACACCATCGATAACGTGAAGGCTAAGATTCAAGACAAAGAGGGGATCCCACCAGACCAG 755 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | || ||| || || ||||| |||| | | | | || ||| || || Sbjct 756 CAGAGGCTCATCTTCGCCGGAAAACAGCTCGAGGATGGCCGTACCCTCGCCGACTACAAT 815 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || || || || || | ||||| ||| Sbjct 816 ATCCAGAAGGAGTCAACTCTCCATTTGGTG 845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428886967311465