Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_007767.1
Length=132959
Score E
Sequences producing significant alignments: (Bits) Value
seq156113 84.2 2e-11
>seq156113
Length=3066
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345
||||| || || |||||||| || || || ||||| || ||| | ||| ||| | |
Sbjct 886 ATGCAGATCTTCGTCAAAACCCTAACCGGCAAAACAATCACCTTGGAAGTCGAGAGCTCC 945
Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404
|| ||| | | |||| ||||| ||||| || || ||||| | || |||||
Sbjct 946 GATACTATCG-ACAATGTAAAGGCCAAAATCCAAGACAAGGAAGGGATTCCTCCGGATCA 1004
Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464
||| | | |||| || || || ||||| ||||||| |||| | || ||||||||
Sbjct 1005 GCAGCGGTTGATTTTCGCTGGTAAGCAATTGGAAGATGGGCGAACCCTAGCGGATTATAA 1064
Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512
||| || || ||||| || | ||| ||||| |||| ||| | || ||
Sbjct 1065 CATCCAGAAGGAGTCGACGTTGCATCTGGTGCTGAGGTTGAGGGGTGG 1112
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424306171672360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |