Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq160375 122 7e-23 seq194317 109 4e-19 seq181690 95.1 1e-14 seq155647 89.7 4e-13 seq116321 87.8 1e-12 seq194543 84.2 2e-11 >seq160375 Length=3367 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || |||||||| || |||| ||| | ||||| Sbjct 1169 AGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCCAAGGTACGGCCGTCC 1228 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||||||| || || || ||||||||| ||| ||||| || | ||||| ||||| Sbjct 1229 TCCAATTGCTTTCCAGCGAAAATAAGCCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCT 1288 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||||| |||||| | | | |||||| | ||| |||| ||||||||| Sbjct 1289 TGAATTTTAGCCTTCACGTTATCAATGGTGTCGGAGCTTTCCACCTCCAAGGTGATGGTC 1348 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || ||||| ||||| |||||||| Sbjct 1349 TTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 1380 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||| ||||| || ||||||||||| |||| ||| | | ||| Sbjct 941 AGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCCAAGGTACGGCCATCC 1000 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || || || || | || |||| ||| ||||| || | ||||| ||||| Sbjct 1001 TCGAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCT 1060 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||||| | |||||| | | | ||||||| | |||| |||| ||||||||| Sbjct 1061 TGAATTTTCGCCTTCACGTTATCAATAGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTC 1120 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||||| || || ||||| |||||||| Sbjct 1121 TTGCCGGTCAAGGTCTTAACAAAGATCTGCAT 1152 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | |||||| |||||||| || || |||||||| || |||| ||| | | ||| Sbjct 29 AGGACAAGATGCAGGGTGGACTCTTTCTGAATGTTGTAATCAGCCAAGGTACGGCCATCC 88 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || || || || | || |||| ||| || ||| || | ||||| || || Sbjct 89 TCAAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTATCC 148 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | | |||||| | ||| |||| |||||||| Sbjct 149 TGGATCTTGGC--CTTCACGTTGTCAATTGTGTCGGAGCTCTCAACCTCCAAGGTGATGG 206 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| || ||||| || || |||||||| Sbjct 207 TTTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 240 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||| ||||| || ||||||||||| |||| ||| | | ||| Sbjct 713 AGCACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCCAAGGTACGGCCATCC 772 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||| || || || | || |||| ||| |||||| || | ||||| ||||| Sbjct 773 TCAAGTTGCTTTCCGGCGAAGATGAGCCTCTGCTGGTCCGGTGGGATCCCCTCCTTGTCC 832 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | | |||||| | ||| |||| ||||| | Sbjct 833 TGGATCTTGGC--CTTGACGTTGTCGATGGTGTCGGAGCTCTCAACCTCCAAAGTGATTG 890 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||||| || || ||||| |||||||| Sbjct 891 TCTTGCCGGTCAAGGTCTTCACAAAGATCTGCAT 924 >seq194317 Length=10706 Score = 109 bits (120), Expect = 4e-19 Identities = 150/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || |||||||| ||||| || |||||||||||||| | ||| | ||||||||| || Sbjct 1330 TGGAGCGTGGATTCCTTCTGGATGTTGTAGTCGGCTAGAGTTCTTCCGTCCTCCAGCTGC 1389 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| || | ||||| ||||||||||| || | ||| |||||||| || ||| Sbjct 1390 TTGCCGGCGAAGATAAGGCGCTGTTGGTCTGGTGGTATGCCTTCTTTGTCCTGGATCTTT 1449 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 ||| || || | | | | ||||| || || || | ||| |||||||| |||| Sbjct 1450 GCT--TTGACATTGTCGATGGTGTCAGAGGATTCAACCTCTAGGGTTATGGTTTTCCCGG 1507 Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTT 16938 | | |||||||| || |||||||| || Sbjct 1508 TTAAGGTTTTGACGAAGATCTGCATCTT 1535 >seq181690 Length=5866 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | || |||| ||| || ||||| |||||||| ||||| ||||| || Sbjct 2507 CCACCTCGGAGGCGAAGGACCAAATGAAGGGTGGATTCCTTTTGGATGTTATAGTCAGCG 2566 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||||| || || || ||| | || | | ||| || || || Sbjct 2567 AGGGTACGGCCGTCCTCCAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCTGGCGGA 2626 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||||||||| ||| | |||||| | | | |||||| | |||| | Sbjct 2627 ATACCCTCTTTGTCTTGAATCTTTGACTTCACGTTATCAATAGTGTCAGAGTTCTCCACT 2686 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| || || |||| || || || ||||||||||| Sbjct 2687 TCCAAAGTGATGGTCTTCCCTGTCAATGTCTTCACGAAAATCTGCAT 2733 >seq155647 Length=3035 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| || ||||| |||||||| || |||||||||||||| Sbjct 2236 CCACCTCTGAGGCGCAGCACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCT 2177 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| ||||||| | |||||||| || | || || || || |||||| || Sbjct 2176 AGGGTCCGACCGTCCTCGAGCTGTTTGCCAGCGAAGATGAGGCGTTGCTGGTCCGGTGGG 2117 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || || ||| || | | | | ||||| || || Sbjct 2116 ATGCCTTCCTTGTCCTGGATCTTAGC--CTTGACATTGTCGATGGTGTCCGAGGATTCAA 2059 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || | || ||||| || || || || |||||||| || ||||||||||| Sbjct 2058 CCTCGAGAGTTATGGTCTTACCCGTTAGGGTTTTGACGAAGATCTGCATTTT 2007 >seq116321 Length=1411 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || | || |||| ||| || || |||||||| || || ||||||||||| Sbjct 863 CCCACCACGGAGACGAAGCACCAAATGGAGAGTTGACTCCTTCTGGATATTGTAGTCGGC 804 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | ||| | | ||||| | ||||| || || | || |||| ||| ||||| || Sbjct 803 GAGGGTACGGCCATCCTCGAGCTGTTTTCCGGCGAAGATGAGCCTCTGCTGGTCTGGTGG 744 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||||||||||| ||| | |||||| | | | ||||| ||| Sbjct 743 GATCCCCTCTTTGTCTTGAATCTTAGCCTTCACGTTATCGATGGTGTCTGAACTCTCGAC 684 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||| || || |||||||| || ||||| ||||| |||||||| Sbjct 683 CTCCAAGGTAATAGTCTTTCCGGTGAGGGTTTTCACAAAGATCTGCAT 636 >seq194543 Length=10949 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || ||||| | || || | || ||||||||||| || ||||||||||| ||||| Sbjct 3252 CCGCCGCGTAGACGGAGGACGAGGTGAAGCGTGGACTCTTTCTGTATGTTGTAATCGGCG 3193 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||||| | ||||| || ||| | || || ||||| || ||| ||| Sbjct 3192 AGCGTACGGCCGTCCTCGAGCTGTTTTCCAGCAAAGATTAGACGCTGCTGATCCGGAGGG 3133 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || || || || |||||| ||||| | | | | ||| ||| | || Sbjct 3132 ATTCCTTCCTTATCCTGGATCTTTGCT--TTCACGTTGTCGATAGTATCGGAGCTTTCGA 3075 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||| || || || || || ||||| || || |||||||| Sbjct 3074 CCTCGAGGGTGATTGTCTTACCAGTTAGGGTTTTCACGAAGATCTGCAT 3026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404099595786970