Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq170648 131 1e-25 seq116321 120 2e-22 seq176217 114 9e-21 seq194543 104 2e-17 seq181690 102 5e-17 seq149224 102 5e-17 seq102836 102 5e-17 seq28676 91.5 1e-13 seq56395 87.8 1e-12 seq194317 84.2 1e-11 seq193254 84.2 1e-11 >seq170648 Length=4288 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 30 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 89 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 90 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 124 >seq116321 Length=1411 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| || | ||| | |||||||||||| || |||||| |||||||||||||| | Sbjct 1092 TACCACCCCTGAGACGGAGCACCAAATGAAGGGTAGACTCCTTCTGAATATTGTAATCGG 1033 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || |||| || | |||||||||||| || || || | || || || | | Sbjct 1032 CCAAGGTCCGACCGTCCTCGAGTTGTTTTCCGGCGAAGATGAGCCTCTGCTGGTCTGGTG 973 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || |||||| || || ||| || || | || |||||| || || | Sbjct 972 GGATACCCTCCTTGTCCTGGATCTTAGCCTTGACGTTATCGATGGTATCTGAGCTCTCCA 913 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || || || || || |||||||| || ||||| |||||||| Sbjct 912 CCTCCAAAGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 864 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | ||||||||| ||||| |||||| || |||||||| || | Sbjct 862 CCACCACGGAGACGAAGCACCAAATGGAGAGTTGACTCCTTCTGGATATTGTAGTCGGCG 803 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| | || || | ||||||||||| || || || | || || || | ||| Sbjct 802 AGGGTACGGCCATCCTCGAGCTGTTTTCCGGCGAAGATGAGCCTCTGCTGGTCTGGTGGG 743 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || |||||||| ||| || |||||| || | || || ||| ||| || || Sbjct 742 ATCCCCTCTTTGTCTTGAATCTTAGCCTTCACGTTATCGATGGTGTCTGAACTCTCGACC 683 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || |||||||| || || || | ||||||||| || |||||||| Sbjct 682 TCCAAGGTAATAGTCTTTCCGGTGAGGGTTTTCACAAAGATCTGCAT 636 >seq176217 Length=4970 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||| | ||| | ||||||||| || ||| |||||||| ||||||||||| | Sbjct 2520 CCACCTCTGAGACGGAGCACCAAATGGAGGGTGGATTCCTTTTGGATATTGTAATCGGCA 2579 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| |||| || | ||| || |||||||| || || | ||| || || | ||| Sbjct 2580 AGGGTACGGCCGTCCTCGAGTTGCTTGCCGGCAAAAATAAGCCTTTGCTGGTCTGGGGGA 2639 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| |||||| || || || || || | | || || ||||| || Sbjct 2640 ATTCCTTCCTTGTCCTGGATCTTAGCTTTGACGTTATCAATTGTGTCAGAGCTTTCGACC 2699 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||||| || || ||||| || |||| ||| ||||||||||| |||||| Sbjct 2700 TCTAAAGTGATGGTTTTTCCTGTCAGGGTCTTCACGAATATTTGCATG 2747 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| || | ||| | ||||| ||||| || ||||||||| || |||||||| | Sbjct 2748 CCACCCCTAAGACGGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAATCGGCA 2807 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| | || || | ||| || |||||||| || || | ||| || || | ||| Sbjct 2808 AGGGTACGGCCATCCTCGAGTTGCTTGCCGGCAAAGATAAGCCTTTGCTGGTCTGGGGGA 2867 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| |||||| || || || || || | | ||| || ||||| || Sbjct 2868 ATTCCTTCCTTGTCCTGGATCTTAGCTTTGACGTTATCAATAGTGTCAGAGCTTTCGACC 2927 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || ||||| || |||| |||||||||||| |||||||| Sbjct 2928 TCCAAAGTGATGGTTTTTCCTGTCAGGGTTTTCACGAAGATCTGCAT 2974 >seq194543 Length=10949 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 ||||| ||| ||| || || || |||||||| | | ||| |||| || | ||| Sbjct 3228 TGAAGCGTGGACTCTTTCTGTATGTTGTAATCGGCGAGCGTACGGCCGTCCTCGAGCTGT 3169 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 ||||| ||||| ||||| || || ||||| | |||| ||||| || ||| || ||| Sbjct 3168 TTTCCAGCAAAGATTAGACGCTGCTGATCCGGAGGGATTCCTTCCTTATCCTGGATCTTT 3109 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||||| || | || |||||| ||||| || || | || || || ||||| || Sbjct 3108 GCTTTCACGTTGTCGATAGTATCGGAGCTTTCGACCTCGAGGGTGATTGTCTTACCAGTT 3049 Query 38295 AAGGTTTTCACGAATATCTGCATGTTTTACAA 38326 | |||||||||||| |||||||| | ||| || Sbjct 3048 AGGGTTTTCACGAAGATCTGCATCTGTTAAAA 3017 >seq181690 Length=5866 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || || ||||||| ||||| ||||| || |||||||||||||||||||| | Sbjct 2961 TACCGCCCCTTAAACGCAGAACCAAGTGAAGGGTCGATTCCTTTTGAATATTGTAATCCG 3020 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | ||| |||| || | |||||||| ||||| || || | ||| || || | | Sbjct 3021 CAAGGGTGCGTCCGTCTTCAAGCTGTTTTCCAGCAAAGATAAGCCTTTGCTGGTCTGGTG 3080 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || || || ||| ||| ||| || || | | ||||| ||| || | Sbjct 3081 GGATCCCCTCCTTATCTTGAATCTTTGCCTTAACGTTGTCAATGGTATCCGAACTCTCCA 3140 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | || || || || || || | ||||||||| ||||| ||||| Sbjct 3141 CTTCAAGGGTTATGGTCTTCCCTGTGAGGGTTTTCACAAATATTTGCAT 3189 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| ||||| | ||| | ||||||||||| || ||||||||| ||||||||||||| Sbjct 3189 TACCGCCTCTGAGACGAAGAACCAAATGAAGGGTCGACTCCTTTTGGATATTGTAATCAG 3248 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || || || ||||| || ||||| || || | ||| || || | || Sbjct 3249 CTAGGGTCCTCCCATCCTCCAACTGTTTCCCTGCAAAGATAAGCCTTTGCTGGTCTGGGG 3308 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || || || ||| ||| ||| || || | | ||||| ||| || | Sbjct 3309 GGATCCCCTCCTTATCTTGAATCTTTGCCTTAACGTTGTCAATGGTATCCGAACTCTCCA 3368 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || || || | ||||||||| ||||| ||||| Sbjct 3369 CCTCAAGGGTTATGGTCTTCCCTGTGAGGGTTTTCACAAATATTTGCAT 3417 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| ||||| | ||| | ||||| ||||| || ||||||||| ||||||||||||| Sbjct 3417 TACCGCCTCTGAGACGAAGAACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCAG 3476 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || || || ||||| || ||||| || || | ||| || || | || Sbjct 3477 CTAGGGTCCTCCCATCCTCCAACTGTTTCCCTGCAAAGATAAGCCTTTGCTGGTCTGGGG 3536 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| || || || ||| ||| ||||| | | ||||| ||||| | Sbjct 3537 GAATCCCTTCCTTATCTTGGATCTTTGCCTTGACATTATCAATTGTATCAGAGCTTTCCA 3596 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || ||||| || | ||||||||| || |||||||| Sbjct 3597 CCTCAAGGGTGATGGTCTTACCGGTGAGGGTTTTCACAAAGATCTGCAT 3645 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||||| | || | ||||||||||| ||| |||||||| || || || |||| Sbjct 2506 ACCACCTCGGAGGCGAAGGACCAAATGAAGGGTGGATTCCTTTTGGATGTTATAGTCAGC 2565 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | ||| |||| || | || ||||| ||||| || | | || ||||| | || Sbjct 2566 GAGGGTACGGCCGTCCTCCAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCTGGCGG 2625 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | || |||||||| ||| ||| |||||| || | | ||| || | || || Sbjct 2626 AATACCCTCTTTGTCTTGAATCTTTGACTTCACGTTATCAATAGTGTCAGAGTTCTCCAC 2685 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| || || || || || || ||||| || |||||||| |||||||| Sbjct 2686 TTCCAAAGTGATGGTCTTCCCTGTCAATGTCTTCACGAAAATCTGCAT 2733 >seq149224 Length=2655 Score = 102 bits (112), Expect = 5e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| | Sbjct 199 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTC 140 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||||| Sbjct 139 GCCAATATTTAGCCTT 124 >seq102836 Length=1094 Score = 102 bits (112), Expect = 5e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| | Sbjct 803 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTC 744 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||||| Sbjct 743 GCCAATATTTAGCCTT 728 >seq28676 Length=296 Score = 91.5 bits (100), Expect = 1e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| | Sbjct 227 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTC 286 Query 20007 GGTAATATTT 20016 | ||||||| Sbjct 287 GCCAATATTT 296 >seq56395 Length=446 Score = 87.8 bits (96), Expect = 1e-12 Identities = 73/88 (83%), Gaps = 5/88 (6%) Strand=Plus/Minus Query 25909 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG--GT---AATCTCGTTAATCCT 25963 ||| |||||||||| ||| ||||||||||||| | ||| || ||||||||||||| Sbjct 249 TTCTCTTGGCTGTGATTTTGCTAGATAGTAGAAATGGGCAGTTAGAATCTCGTTAATCTA 190 Query 25964 TTCATGCGCGTCACTAATTAGATGACGA 25991 ||||||||| ||| || ||||||||||| Sbjct 189 TTCATGCGCATCATTATTTAGATGACGA 162 >seq194317 Length=10706 Score = 84.2 bits (92), Expect = 1e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 ||||| || || ||||| || | | | | | |||| || | || || ||||| || Sbjct 1342 TCCTTCTGGATGTTGTAGTCGGCTAGAGTTCTTCCGTCCTCCAGCTGCTTGCCGGCGAAG 1401 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || ||||| ||||| || | || | ||||||||||||| || ||| || ||||| Sbjct 1402 ATAAGGCGCTGTTGGTCTGGTGGTATGCCTTCTTTGTCCTGGATCTTTGCTTTGACATTG 1461 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | || || || |||||| |||| || || ||||| || || |||||||| ||| Sbjct 1462 TCGATGGTGTCAGAGGATTCAACCTCTAGGGTTATGGTTTTCCCGGTTAAGGTTTTGACG 1521 Query 38307 AATATCTGCATGTT 38320 || |||||||| || Sbjct 1522 AAGATCTGCATCTT 1535 >seq193254 Length=9810 Score = 84.2 bits (92), Expect = 1e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| |||||| ||||||||| |||||||||| |||||||| || | Sbjct 865 CTCTCTTTTCAAAGTCATTTTCATCTTTCCCTCGTGGTACTTGTTTTCTATCGGTATCTC 924 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||||| Sbjct 925 GCCAATATTTAGCCTT 940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334129937519693