Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq170648 131 1e-25
seq116321 120 2e-22
seq176217 114 9e-21
seq194543 104 2e-17
seq181690 102 5e-17
seq149224 102 5e-17
seq102836 102 5e-17
seq28676 91.5 1e-13
seq56395 87.8 1e-12
seq194317 84.2 1e-11
seq193254 84.2 1e-11
>seq170648
Length=4288
Score = 131 bits (144), Expect = 1e-25
Identities = 86/95 (91%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| ||||||||| |||| || ||||||||
Sbjct 30 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 89
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 90 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 124
>seq116321
Length=1411
Score = 120 bits (132), Expect = 2e-22
Identities = 164/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| || | ||| | |||||||||||| || |||||| |||||||||||||| |
Sbjct 1092 TACCACCCCTGAGACGGAGCACCAAATGAAGGGTAGACTCCTTCTGAATATTGTAATCGG 1033
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
||| || |||| || | |||||||||||| || || || | || || || | |
Sbjct 1032 CCAAGGTCCGACCGTCCTCGAGTTGTTTTCCGGCGAAGATGAGCCTCTGCTGGTCTGGTG 973
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| || || |||||| || || ||| || || | || |||||| || || |
Sbjct 972 GGATACCCTCCTTGTCCTGGATCTTAGCCTTGACGTTATCGATGGTATCTGAGCTCTCCA 913
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| || || || || || || || |||||||| || ||||| ||||||||
Sbjct 912 CCTCCAAAGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 864
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | | ||| | ||||||||| ||||| |||||| || |||||||| || |
Sbjct 862 CCACCACGGAGACGAAGCACCAAATGGAGAGTTGACTCCTTCTGGATATTGTAGTCGGCG 803
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| ||| | || || | ||||||||||| || || || | || || || | |||
Sbjct 802 AGGGTACGGCCATCCTCGAGCTGTTTTCCGGCGAAGATGAGCCTCTGCTGGTCTGGTGGG 743
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| || |||||||| ||| || |||||| || | || || ||| ||| || ||
Sbjct 742 ATCCCCTCTTTGTCTTGAATCTTAGCCTTCACGTTATCGATGGTGTCTGAACTCTCGACC 683
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| || |||||||| || || || | ||||||||| || ||||||||
Sbjct 682 TCCAAGGTAATAGTCTTTCCGGTGAGGGTTTTCACAAAGATCTGCAT 636
>seq176217
Length=4970
Score = 114 bits (126), Expect = 9e-21
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
|||||||| | ||| | ||||||||| || ||| |||||||| ||||||||||| |
Sbjct 2520 CCACCTCTGAGACGGAGCACCAAATGGAGGGTGGATTCCTTTTGGATATTGTAATCGGCA 2579
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| ||| |||| || | ||| || |||||||| || || | ||| || || | |||
Sbjct 2580 AGGGTACGGCCGTCCTCGAGTTGCTTGCCGGCAAAAATAAGCCTTTGCTGGTCTGGGGGA 2639
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||||| |||||| || || || || || | | || || ||||| ||
Sbjct 2640 ATTCCTTCCTTGTCCTGGATCTTAGCTTTGACGTTATCAATTGTGTCAGAGCTTTCGACC 2699
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
||||| || || ||||| || |||| ||| ||||||||||| ||||||
Sbjct 2700 TCTAAAGTGATGGTTTTTCCTGTCAGGGTCTTCACGAATATTTGCATG 2747
Score = 98.7 bits (108), Expect = 7e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| || | ||| | ||||| ||||| || ||||||||| || |||||||| |
Sbjct 2748 CCACCCCTAAGACGGAGGACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAATCGGCA 2807
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| ||| | || || | ||| || |||||||| || || | ||| || || | |||
Sbjct 2808 AGGGTACGGCCATCCTCGAGTTGCTTGCCGGCAAAGATAAGCCTTTGCTGGTCTGGGGGA 2867
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||||| |||||| || || || || || | | ||| || ||||| ||
Sbjct 2868 ATTCCTTCCTTGTCCTGGATCTTAGCTTTGACGTTATCAATAGTGTCAGAGCTTTCGACC 2927
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| || || || ||||| || |||| |||||||||||| ||||||||
Sbjct 2928 TCCAAAGTGATGGTTTTTCCTGTCAGGGTTTTCACGAAGATCTGCAT 2974
>seq194543
Length=10949
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174
||||| ||| ||| || || || |||||||| | | ||| |||| || | |||
Sbjct 3228 TGAAGCGTGGACTCTTTCTGTATGTTGTAATCGGCGAGCGTACGGCCGTCCTCGAGCTGT 3169
Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234
||||| ||||| ||||| || || ||||| | |||| ||||| || ||| || |||
Sbjct 3168 TTTCCAGCAAAGATTAGACGCTGCTGATCCGGAGGGATTCCTTCCTTATCCTGGATCTTT 3109
Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294
||||| || | || |||||| ||||| || || | || || || ||||| ||
Sbjct 3108 GCTTTCACGTTGTCGATAGTATCGGAGCTTTCGACCTCGAGGGTGATTGTCTTACCAGTT 3049
Query 38295 AAGGTTTTCACGAATATCTGCATGTTTTACAA 38326
| |||||||||||| |||||||| | ||| ||
Sbjct 3048 AGGGTTTTCACGAAGATCTGCATCTGTTAAAA 3017
>seq181690
Length=5866
Score = 102 bits (112), Expect = 5e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
|||| || || ||||||| ||||| ||||| || |||||||||||||||||||| |
Sbjct 2961 TACCGCCCCTTAAACGCAGAACCAAGTGAAGGGTCGATTCCTTTTGAATATTGTAATCCG 3020
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| ||| |||| || | |||||||| ||||| || || | ||| || || | |
Sbjct 3021 CAAGGGTGCGTCCGTCTTCAAGCTGTTTTCCAGCAAAGATAAGCCTTTGCTGGTCTGGTG 3080
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| || || || || ||| ||| ||| || || | | ||||| ||| || |
Sbjct 3081 GGATCCCCTCCTTATCTTGAATCTTTGCCTTAACGTTGTCAATGGTATCCGAACTCTCCA 3140
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|||| | || || || || || || | ||||||||| ||||| |||||
Sbjct 3141 CTTCAAGGGTTATGGTCTTCCCTGTGAGGGTTTTCACAAATATTTGCAT 3189
Score = 93.3 bits (102), Expect = 3e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
|||| ||||| | ||| | ||||||||||| || ||||||||| |||||||||||||
Sbjct 3189 TACCGCCTCTGAGACGAAGAACCAAATGAAGGGTCGACTCCTTTTGGATATTGTAATCAG 3248
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| | | || || || ||||| || ||||| || || | ||| || || | ||
Sbjct 3249 CTAGGGTCCTCCCATCCTCCAACTGTTTCCCTGCAAAGATAAGCCTTTGCTGGTCTGGGG 3308
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| || || || || ||| ||| ||| || || | | ||||| ||| || |
Sbjct 3309 GGATCCCCTCCTTATCTTGAATCTTTGCCTTAACGTTGTCAATGGTATCCGAACTCTCCA 3368
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| || | || || || || || || | ||||||||| ||||| |||||
Sbjct 3369 CCTCAAGGGTTATGGTCTTCCCTGTGAGGGTTTTCACAAATATTTGCAT 3417
Score = 93.3 bits (102), Expect = 3e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
|||| ||||| | ||| | ||||| ||||| || ||||||||| |||||||||||||
Sbjct 3417 TACCGCCTCTGAGACGAAGAACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCAG 3476
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| | | || || || ||||| || ||||| || || | ||| || || | ||
Sbjct 3477 CTAGGGTCCTCCCATCCTCCAACTGTTTCCCTGCAAAGATAAGCCTTTGCTGGTCTGGGG 3536
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
| | ||||| || || || ||| ||| ||||| | | ||||| ||||| |
Sbjct 3537 GAATCCCTTCCTTATCTTGGATCTTTGCCTTGACATTATCAATTGTATCAGAGCTTTCCA 3596
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| || | || || || ||||| || | ||||||||| || ||||||||
Sbjct 3597 CCTCAAGGGTGATGGTCTTACCGGTGAGGGTTTTCACAAAGATCTGCAT 3645
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||||| | || | ||||||||||| ||| |||||||| || || || ||||
Sbjct 2506 ACCACCTCGGAGGCGAAGGACCAAATGAAGGGTGGATTCCTTTTGGATGTTATAGTCAGC 2565
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
| ||| |||| || | || ||||| ||||| || | | || ||||| | ||
Sbjct 2566 GAGGGTACGGCCGTCCTCCAGCTGCTTTCCTGCAAAGATCAATCTCTGCTGATCTGGCGG 2625
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
| || |||||||| ||| ||| |||||| || | | ||| || | || ||
Sbjct 2626 AATACCCTCTTTGTCTTGAATCTTTGACTTCACGTTATCAATAGTGTCAGAGTTCTCCAC 2685
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||| || || || || || || ||||| || |||||||| ||||||||
Sbjct 2686 TTCCAAAGTGATGGTCTTCCCTGTCAATGTCTTCACGAAAATCTGCAT 2733
>seq149224
Length=2655
Score = 102 bits (112), Expect = 5e-17
Identities = 68/76 (89%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| |
Sbjct 199 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTC 140
Query 20007 GGTAATATTTAGCCTT 20022
| |||||||||||||
Sbjct 139 GCCAATATTTAGCCTT 124
>seq102836
Length=1094
Score = 102 bits (112), Expect = 5e-17
Identities = 68/76 (89%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| |
Sbjct 803 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTC 744
Query 20007 GGTAATATTTAGCCTT 20022
| |||||||||||||
Sbjct 743 GCCAATATTTAGCCTT 728
>seq28676
Length=296
Score = 91.5 bits (100), Expect = 1e-13
Identities = 62/70 (89%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| |
Sbjct 227 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTC 286
Query 20007 GGTAATATTT 20016
| |||||||
Sbjct 287 GCCAATATTT 296
>seq56395
Length=446
Score = 87.8 bits (96), Expect = 1e-12
Identities = 73/88 (83%), Gaps = 5/88 (6%)
Strand=Plus/Minus
Query 25909 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG--GT---AATCTCGTTAATCCT 25963
||| |||||||||| ||| ||||||||||||| | ||| || |||||||||||||
Sbjct 249 TTCTCTTGGCTGTGATTTTGCTAGATAGTAGAAATGGGCAGTTAGAATCTCGTTAATCTA 190
Query 25964 TTCATGCGCGTCACTAATTAGATGACGA 25991
||||||||| ||| || |||||||||||
Sbjct 189 TTCATGCGCATCATTATTTAGATGACGA 162
>seq194317
Length=10706
Score = 84.2 bits (92), Expect = 1e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186
||||| || || ||||| || | | | | | |||| || | || || ||||| ||
Sbjct 1342 TCCTTCTGGATGTTGTAGTCGGCTAGAGTTCTTCCGTCCTCCAGCTGCTTGCCGGCGAAG 1401
Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246
|| ||||| ||||| || | || | ||||||||||||| || ||| || |||||
Sbjct 1402 ATAAGGCGCTGTTGGTCTGGTGGTATGCCTTCTTTGTCCTGGATCTTTGCTTTGACATTG 1461
Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306
| || || || |||||| |||| || || ||||| || || |||||||| |||
Sbjct 1462 TCGATGGTGTCAGAGGATTCAACCTCTAGGGTTATGGTTTTCCCGGTTAAGGTTTTGACG 1521
Query 38307 AATATCTGCATGTT 38320
|| |||||||| ||
Sbjct 1522 AAGATCTGCATCTT 1535
>seq193254
Length=9810
Score = 84.2 bits (92), Expect = 1e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||| |||||| ||||||||| |||||||||| |||||||| || |
Sbjct 865 CTCTCTTTTCAAAGTCATTTTCATCTTTCCCTCGTGGTACTTGTTTTCTATCGGTATCTC 924
Query 20007 GGTAATATTTAGCCTT 20022
| |||||||||||||
Sbjct 925 GCCAATATTTAGCCTT 940
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334129937519693
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