Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq197427 154 2e-32 seq181835 96.9 4e-15 seq180626 89.7 7e-13 seq190796 86.0 8e-12 >seq197427 Length=19924 Score = 154 bits (170), Expect = 2e-32 Identities = 251/359 (70%), Gaps = 2/359 (1%) Strand=Plus/Plus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| ||| || || ||||||||||| | || |||||||| || || |||||||| | Sbjct 13953 ACAGCAAGCAGGCAAAATCGCAGTGCAAGCCTTCGTCTCTTGAGATCAACTCGTTGGAGA 14012 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 32772 | || | || ||||| | || |||||||| ||||| || || | |||| | | ||| | Sbjct 14013 AGGTCAACCCAGGCATCAACCCGCGCTTTTTGAGCCAGAAGATCG-CGCAGAAGCTCCCG 14071 Query 32773 AA-AAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 32831 | |||||||| ||||| || |||||||||| | || ||| | || ||| Sbjct 14072 GAGAAGAAAATCCCTTCGACGCAAGCAAAGGCAACGATTCGCTCGGCGAAAGACTCGCCA 14131 Query 32832 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 32891 | | |||||||| | ||||| | ||||||||||| || ||||| || ||||| || Sbjct 14132 CCGTCGATCCACTTGAGGGCCCACTTGGCCTTCTTTTCCACGCAAGGGATCGTCTCGATC 14191 Query 32892 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 32951 || | || || || || || ||| ||| || | || | || | ||| || || Sbjct 14192 GCGTGGAAAAGCCGGTCCTTCTCGTTAGAATCCTTGATGTACGACTCGAGCAAGAGGCTG 14251 Query 32952 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTC 33010 |||||||| || || ||||| || ||||| ||||| || ||||| ||| ||| ||||| Sbjct 14252 TACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAAAAGGCTCTGGCCTC 14310 >seq181835 Length=5898 Score = 96.9 bits (106), Expect = 4e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 63248 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCT 63307 || |||| |||| |||| | | ||| |||| ||||||||||||||| ||||| || || Sbjct 3444 GCAGTGTCATTAAAAACACGTAGCATGGGAACAATACCATTGGATGTCCCATTTGTTCCA 3385 Query 63308 GAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATT 63367 ||||||||| || | ||||| |||||| || || | ||| ||||| || || Sbjct 3384 CGGATATAGCTGCCTGTAGCACGTATATTATGAACAGAGACACCAATTCCTCCCGCTGAC 3325 Query 63368 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 63427 || |||| ||| || || || || ||||| || || || ||||||||||| || Sbjct 3324 TTGCTGATTGTTGCACACTCCTTCAAAGTTTCATATATTCCTTCAATACTATCATCTTTC 3265 Query 63428 ATGTTAAGTAGAAAACAGCTA 63448 ||| | | ||| |||||| Sbjct 3264 ATGCACACCAAAAAGCAGCTA 3244 >seq180626 Length=5659 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 || || ||||| | || | || |||| |||| |||||| | |||||||| | |||| Sbjct 2941 CCCCCTTGATCAACATAACGGGCAGTGTCATTAAAAACTCGTAGCATTGGAACCACACCA 2882 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 || ||||| ||||| || || |||||| || || |||||||||||||| || || Sbjct 2881 TTTGATGTCCCATTTGTTCCACGGATATAACTCCCTGTGGCACGAATATTATGAACAGAG 2822 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | || ||||| || || || ||| | || || || || ||||||||||| Sbjct 2821 ACTCCGATTCCTCCAGCAGACTTGCTGATAACAGCACACTCCTTCAAAGTATCATAGATT 2762 Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 || || || || ||||| ||||| | | ||| |||||| Sbjct 2761 CCTTCAATGCTGTCATCTTTCATGCACACCAAAAAGCAGCTA 2720 >seq190796 Length=8466 Score = 86.0 bits (94), Expect = 8e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || || |||||||| ||||||||||||||| ||| | ||| || || || || | Sbjct 3084 CAAGCAAAGTCGCAGTGCAGACCCTCGTCTCTAGAAATAAGTTCATTTGAGAATGTCAAG 3143 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG 32757 || ||||| || || | |||||||||||||||||||| Sbjct 3144 CCTGGCATCAGTCCCCTCTTTTTAAGCCAAAATATGG 3180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632046312158800