Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq176217 84.2 2e-11 >seq176217 Length=4970 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 111280 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111339 ||||| ||||| ||||| || || ||||||||||||| ||| ||||| ||| | || Sbjct 2653 GACAAGGAAGGAATTCCCCCAGACCAGCAAAGGCTTATTTTTGCCGGCAAGCAACTCGAG 2594 Query 111340 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTG 111399 || || | |||||||| ||||| ||||| ||||| || || ||||| ||| | Sbjct 2593 GACGGCCGTACCCTTGCCGATTACAATATCCAAAAGGAATCCACCCTCCATTTGGTGCTC 2534 Query 111400 CGTCTGCGCGGTGGCA 111415 ||||| | ||||||| Sbjct 2533 CGTCTCAGAGGTGGCA 2518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422007793372600