Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq196719 161 2e-34 seq197427 107 4e-18 seq199587 87.8 4e-12 seq196792 87.8 4e-12 seq196250 87.8 4e-12 seq192461 87.8 4e-12 seq177521 87.8 4e-12 seq162838 87.8 4e-12 seq162636 87.8 4e-12 seq120915 87.8 4e-12 seq196962 86.0 1e-11 seq174778 86.0 1e-11 >seq196719 Length=14904 Score = 161 bits (178), Expect = 2e-34 Identities = 211/292 (72%), Gaps = 0/292 (0%) Strand=Plus/Minus Query 218517 TGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCC 218576 |||||| || |||||||||| || || || ||| | ||| | |||| || ||||| Sbjct 10815 TGACTTTGTCAACAAGGAGCTTATACTGTTTTCGATGGCAGATCTTCAGCGATCAATTCC 10756 Query 218577 CAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCG 218636 |||| ||||| | || ||| ||| | |||||||| || | |||||||| Sbjct 10755 TTCGATGGTTGATGGTTTGAAACCAGGACAGAGGAAGATCCTGTTCTGTTCTTTCAAGCG 10696 Query 218637 GAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGG 218696 ||| | || | ||| || || |||||||| |||||||||||||| || ||| | Sbjct 10695 CAACTTTGTCAAGGAAGCAAAAGTTGCTCAGTTCTCTGGTTATGTATCTGAGCATTCGGC 10636 Query 218697 CTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGT 218756 |||||||| || ||||||||||| || | ||||| || ||||||||||| ||||| Sbjct 10635 TTACCATCATGGCGAGCAGAGTCTTGCTAGTACAATTGTTGGTATGGCACAGGATTATGT 10576 Query 218757 GGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808 ||| ||||||||||| ||| | || | ||||| || |||||||| ||||| Sbjct 10575 GGGGAGTAACAACATAAACCTTCTCCAACCCAATGGCCAGTTTGGCACTCGT 10524 >seq197427 Length=19924 Score = 107 bits (118), Expect = 4e-18 Identities = 531/843 (63%), Gaps = 2/843 (0%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 ||||| || || | ||| |||| || | ||| |||||||| | || || || || | Sbjct 13694 TCGAAAAAGTTTGTCTTCCCCTGCAAACTGATCAGCTCCATCCAATCAAACGGATTCTTC 13753 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 |||| |||| || || || | || | || | | || || || || || | | Sbjct 13754 GCATCGTACATTTTTCCATACCCCAAAGCACCCAACAGCCTATCAGCGACGAATTCAATA 13813 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 || || | ||||| || |||||||| | || | ||| || | || || |||| Sbjct 13814 TATTGGCTCATCAAATCGCCATTCATGCCCACCAGAGCACACGGCAGCGCGTCGCAGACA 13873 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || ||| | ||| | | || || || |||||||| || | || | || |||| Sbjct 13874 AACTCCCTCTCGATCTCCACCGCATCGGCCACAATTCCCCTGACTCGCTCCTCGCTCAGC 13933 Query 251803 TTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGA 251862 || | |||| |||||| | | |||| | ||||| || ||||| | Sbjct 13934 TTCTGAGTCAGCAACTCGTACAGCAAGCAGGCAAAATCGCAGTGCAAGCCTTCGTCTCTT 13993 Query 251863 CTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAG 251922 ||| ||||||||||| | || |||||||||| ||| || || ||||||||||| Sbjct 13994 GAGATCAACTCGTTGGAGAAGGTCAACCCAGGCATCAACCCGCGCTTTTTGAGCCAGAAG 14053 Query 251923 ATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCGC 251982 || ||||| ||| || ||||| | | || ||||| || | | ||||| | ||| Sbjct 14054 ATCGCGCAGAAGCTCCCGGAGAAGAAAATCCCTTCGACGCAAGCAAAGGCAACGATTCGC 14113 Query 251983 TCAGCAAACGACTTGTCCTGCGAC-AAGAACTTCTGTGCCCATGCTGCCTTCTTTCCAAC 252041 || || || |||| | || || | | |||| | ||||| ||||||||| | || Sbjct 14114 TCGGCGAAAGACTCG-CCACCGTCGATCCACTTGAGGGCCCACTTGGCCTTCTTTTCCAC 14172 Query 252042 CGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTCGATGAG 252101 ||||| || ||||| || | || || || | |||| | |||| |||| Sbjct 14173 GCAAGGGATCGTCTCGATCGCGTGGAAAAGCCGGTCCTTCTCGTTAGAATCCTTGATGTA 14232 Query 252102 CGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTGGTAAGC 252161 || || |||| ||| |||||| || || |||||| ||| || || ||| | | Sbjct 14233 CGACTCGAGCAAGAGGCTGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCC 14292 Query 252162 ATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTGCAATGTTCTC 252221 || || | || || | ||| ||| | || || || | |||||| Sbjct 14293 GTAAAAGGCTCTGGCCTCAGCTACCTGGACCTCCTTCATGAACCTGCCGGCCAGGTTCTC 14352 Query 252222 CATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAAGTGACGCTC 252281 || || || || || | | || |||||| | || | | |||||||||| ||||| Sbjct 14353 CAAGACGATACCGTCAGAGGCGGCGAAGAAGGCGAGGACGTGGGTGATGAAGTGTCGCTC 14412 Query 252282 ATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGAACTTCTTCCAC 252341 |||||| | || | || ||||| | | ||| ||| |||||||| | Sbjct 14413 GTCGTCGGTCAGGGTTTCCTCCCAGTGGCGGAGGTCGGAGGAGAGATCGACTTCTTCAGC 14472 Query 252342 CGTCCAGAATGTGGACACCGCCTTCTTGTACATTGCGAACACATCAGGGTACTTGATTGG 252401 ||||||||| | || | || |||||||||||| | | | | |||||||||||||| Sbjct 14473 CGTCCAGAAGGAGGCTTCTGCTTTCTTGTACATTTCCCAGATTTGTGGGTACTTGATTGG 14532 Query 252402 GAA 252404 || Sbjct 14533 AAA 14535 >seq199587 Length=4651 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 330 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 271 Query 142563 CCCCAC 142568 |||||| Sbjct 270 CCCCAC 265 >seq196792 Length=15161 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 2045 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1986 Query 142563 CCCCAC 142568 |||||| Sbjct 1985 CCCCAC 1980 >seq196250 Length=13534 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 6449 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 6508 Query 142563 CCCCAC 142568 |||||| Sbjct 6509 CCCCAC 6514 >seq192461 Length=9305 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 6434 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 6375 Query 142563 CCCCAC 142568 |||||| Sbjct 6374 CCCCAC 6369 >seq177521 Length=5161 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 4865 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 4924 Query 142563 CCCCAC 142568 |||||| Sbjct 4925 CCCCAC 4930 >seq162838 Length=3557 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 1010 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1069 Query 142563 CCCCAC 142568 |||||| Sbjct 1070 CCCCAC 1075 >seq162636 Length=3542 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 801 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 742 Query 142563 CCCCAC 142568 |||||| Sbjct 741 CCCCAC 736 >seq120915 Length=1542 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 932 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 873 Query 142563 CCCCAC 142568 |||||| Sbjct 872 CCCCAC 867 >seq196962 Length=15922 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 12394 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 12335 Query 142564 CCCAC 142568 ||||| Sbjct 12334 CCCAC 12330 >seq174778 Length=4783 Score = 86.0 bits (94), Expect = 1e-11 Identities = 108/147 (73%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 218656 AAGGTCGCTCAGT-TTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCA 218714 ||||| ||||||| ||||||| ||||| || || ||| | || ||| | || |||| Sbjct 1970 AAGGTTGCTCAGTATTTCTGGGTATGTGTCGGAGCATTCAGCTTATCATTATGGGGAGCC 1911 Query 218715 GAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAA 218774 |||||| || |||| || || ||||||||||| ||| | |||| |||||||| || Sbjct 1910 GAGTCTAGCCAGTACCATAGTTGGAATGGCACAGGATTATCTAGGCATCAACAACATCAA 1851 Query 218775 CTTGCTGCTCCCCAACGGTCAGTTTGG 218801 ||| || | || || || || ||||| Sbjct 1850 CTTACTCCAACCAAATGGACAATTTGG 1824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1025200294860723