Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq181690 104 2e-17 seq194317 87.8 1e-12 seq116321 84.2 2e-11 >seq181690 Length=5866 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||||||| | ||||| | || || || ||||| ||| | ||| ||| | Sbjct 3189 ATGCAAATATTTGTGAAAACCCTCACAGGGAAGACCATAACCCTTGAAGTGGAGAGTTCG 3130 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | ||||| ||| ||| ||||| ||||| | || | |||| Sbjct 3129 GATACCATTGACAACGTTAAGGCAAAGATTCAAGATAAGGAGGGGATCCCACCAGACCAG 3070 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || |||||||||||||| ||||| || ||||| | || | || ||||||||| Sbjct 3069 CAAAGGCTTATCTTTGCTGGAAAACAGCTTGAAGACGGACGCACCCTTGCGGATTACAAT 3010 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| |||||||| || ||||| |||| | |||||| | || || Sbjct 3009 ATTCAAAAGGAATCGACCCTTCACTTGGTTCTGCGTTTAAGGGGCGG 2963 >seq194317 Length=10706 Score = 87.8 bits (96), Expect = 1e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 || ||||| || || | ||||| ||||| || |||||||| ||| | || ||| || Sbjct 1535 AAGATGCAGATCTTCGTCAAAACCTTAACCGGGAAAACCATAACCCTAGAGGTTGAATCC 1476 Query 21891 GCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAAC 21950 | || || | | | || | || ||| || || ||||| || |||| | || Sbjct 1475 TCTGACACCATCGACAATGTCAAAGCAAAGATCCAGGACAAAGAAGGCATACCACCAGAC 1416 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 |||||| | |||||||| || ||||| || || || || || |||| | ||||| ||| Sbjct 1415 CAACAGCGCCTTATCTTCGCCGGCAAGCAGCTGGAGGACGGAAGAACTCTAGCCGACTAC 1356 Query 22011 AATATTCAGAAGGAATCTACTCTTCA 22036 || || ||||||||||| || || || Sbjct 1355 AACATCCAGAAGGAATCCACGCTCCA 1330 >seq116321 Length=1411 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || || |||||| | || | |||| ||||| || ||||| || || |||||||| || Sbjct 957 GACAAGGAGGGTATCCCACCAGACCAGCAGAGGCTCATCTTCGCCGGAAAACAACTCGAG 1016 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGT 22042 || || ||||||||||||||||||||||||| ||||| |||||| |||| Sbjct 1017 GACGGTCGGACCTTGGCCGATTACAATATTCAGAAGGAGTCTACCCTTCATTTGGT 1072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357250984776862