Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq160375 111 1e-19
seq194317 105 6e-18
seq116321 104 2e-17
seq194543 100 2e-16
seq156113 98.7 8e-16
seq93507 98.7 8e-16
seq176217 95.1 1e-14
seq188063 93.3 4e-14
seq162333 91.5 1e-13
seq101090 84.2 2e-11
>seq160375
Length=3367
Score = 111 bits (122), Expect = 1e-19
Identities = 162/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| ||||| || | | || | ||| | || || ||||| ||||||||||||||
Sbjct 13 ACCACCACGGAGACGGAGGACAAGATGCAGGGTGGACTCTTTCTGAATGTTGTAATCAGC 72
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
|| ||||| ||| ||||| || ||||||||| ||||||| | ||| || ||||| ||
Sbjct 73 CAAGGTACGGCCATCCTCAAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGATCCGGTGG 132
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334
|| || || || || ||||| || | | |||| ||||||| | || ||
Sbjct 133 GATCCCCTCCTTATCCTGGATCTTGGCCTTCACGTTGTCAATTGTGTCGGAGCTCTCAAC 192
Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383
|||| ||| | ||||||||||| || ||||| || || |||||||||
Sbjct 193 CTCCAAGGTGATGGTTTTGCCGGTGAGGGTTTTCACGAAGATCTGCATG 241
Score = 102 bits (112), Expect = 7e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233
|| || |||| || ||||| || || ||||| ||||| || ||||| |||||||
Sbjct 488 ACCAAGTGTAGGGTGGATTCCTTCTGGATGTTATAATCAGCCAAGGTACGGCCATCTTCA 547
Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293
|| || || || ||| ||||||| | ||| || ||||| || || || || |||||
Sbjct 548 AGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCCTGG 607
Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353
||||| || | | || | |||||||| | || || |||| ||| | ||||||
Sbjct 608 ATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCAACCTCCAAGGTGATGGTTTTG 667
Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
||||||| || || ||||| ||||||||
Sbjct 668 CCGGTCAAGGTCTTAACAAAGATCTGCAT 696
Score = 100 bits (110), Expect = 2e-16
Identities = 141/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| ||||| || ||||||||||| || || ||||| ||| |||||||| || ||
Sbjct 728 GTGGATTCCTTCTGAATGTTGTAGTCAGCCAAGGTACGGCCATCCTCAAGTTGCTTTCCG 787
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
||| ||||||| | ||| |||||||| || || || || ||||| ||||| ||
Sbjct 788 GCGAAGATGAGCCTCTGCTGGTCCGGTGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTG 847
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | || | |||||||| | || || |||| || | || |||||||||| ||
Sbjct 848 ACGTTGTCGATGGTGTCGGAGCTCTCAACCTCCAAAGTGATTGTCTTGCCGGTCAAGGTC 907
Query 114366 TTTACAAAAATCTGCATG 114383
|| ||||| |||||||||
Sbjct 908 TTCACAAAGATCTGCATG 925
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | || || || | || || || || || |||||||||||
Sbjct 1151 ATACCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCA 1210
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| ||||| || || | ||| || |||||| | || || | ||| ||||| ||
Sbjct 1211 GCCAAGGTACGGCCGTCCTCCAATTGCTTTCCAGCGAAAATAAGCCTCTGCTGGTCTGGT 1270
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || || || ||||| ||| || || | | |||| |||||||| | |||
Sbjct 1271 GGGATTCCCTCCTTGTCTTGAATTTTAGCCTTCACGTTATCAATGGTGTCGGAGCTTTCC 1330
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| ||| | || |||||||| || ||||| ||||| ||||||||
Sbjct 1331 ACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 1380
>seq194317
Length=10706
Score = 105 bits (116), Expect = 6e-18
Identities = 142/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244
||| ||||| || || |||||||| ||| | ||| | || || || || || ||
Sbjct 1335 CGTGGATTCCTTCTGGATGTTGTAGTCGGCTAGAGTTCTTCCGTCCTCCAGCTGCTTGCC 1394
Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304
||| |||| || ||||||||||| || || |||||||||||||| |||||| |||
Sbjct 1395 GGCGAAGATAAGGCGCTGTTGGTCTGGTGGTATGCCTTCTTTGTCCTGGATCTTTGCTTT 1454
Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364
| | || | |||||| | |||||| || || | ||| | ||||| ||||| | ||
Sbjct 1455 GACATTGTCGATGGTGTCAGAGGATTCAACCTCTAGGGTTATGGTTTTCCCGGTTAAGGT 1514
Query 114365 TTTTACAAAAATCTGCAT 114382
||| || || ||||||||
Sbjct 1515 TTTGACGAAGATCTGCAT 1532
>seq116321
Length=1411
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| ||||| || || ||||||||||| || ||||| ||||||||| || || ||
Sbjct 1288 GTGGATTCCTTCTGGATGTTGTAATCAGCCAAGGTACGGCCATCTTCAAGCTGCTTTCCG 1229
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
||| ||||||| | ||| || ||||| || || || || ||||| ||||| ||
Sbjct 1228 GCGAAGATGAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTG 1169
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | |||| |||||||| | ||||| |||| ||| | || || |||||||| ||
Sbjct 1168 ACGTTGTCAATGGTGTCGGAGCTCTCGACCTCCAAGGTAATGGTCTTTCCGGTCAGGGTC 1109
Query 114366 TTTACAAAAATCTGCAT 114382
|| || || ||||||||
Sbjct 1108 TTGACGAAGATCTGCAT 1092
>seq194543
Length=10949
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| ||||| ||||| | | || | || | ||| || ||||| || ||||||||||||
Sbjct 3255 ATGCCGCCGCGTAGACGGAGGACGAGGTGAAGCGTGGACTCTTTCTGTATGTTGTAATCG 3196
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| ||||| || || || ||||| ||||| |||| |||||||| || ||||||
Sbjct 3195 GCGAGCGTACGGCCGTCCTCGAGCTGTTTTCCAGCAAAGATTAGACGCTGCTGATCCGGA 3136
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || ||||| || || |||||| ||| | | || | || |||| | ||||
Sbjct 3135 GGGATTCCTTCCTTATCCTGGATCTTTGCTTTCACGTTGTCGATAGTATCGGAGCTTTCG 3076
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | ||| | || || || || || ||||| || || ||||||||
Sbjct 3075 ACCTCGAGGGTGATTGTCTTACCAGTTAGGGTTTTCACGAAGATCTGCAT 3026
>seq156113
Length=3066
Score = 98.7 bits (108), Expect = 8e-16
Identities = 153/216 (71%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 114168 CTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACGAGA 114226
|||| || | ||| | ||| || || || || ||||| ||||| ||| | || ||
Sbjct 1100 CTCAGCACCAGATGCAACGTCGACTCCTTCTGGATGTTATAATCCGCT-AGGGTTCGCCC 1042
Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286
|||||| | ||| ||||||||| | || | ||||| || ||||||||||| ||||| ||
Sbjct 1041 ATCTTCCAATTGCTTACCAGCGAAAATCAACCGCTGCTGATCCGGAGGAATCCCTTCCTT 982
Query 114287 GTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCAC 114346
||| || || |||| | || | || |||| | ||||| |||| ||| |
Sbjct 981 GTCTTGGATTTTGGCCTTTACATTGTCGATAGTATCGGAGCTCTCGACTTCCAAGGTGAT 922
Query 114347 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
||||||||||| || ||||| || || ||||||||
Sbjct 921 TGTTTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 886
>seq93507
Length=917
Score = 98.7 bits (108), Expect = 8e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233
|| ||||| | || ||||| ||||| |||||||||||| | ||||| || |||
Sbjct 623 ACCAAATGGAGGGTGGATTCCTTTTGGATGTTGTAATCGGCAAGGGTACGGCCGTCCTCA 682
Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293
||||| || || ||| ||||||| | || ||||| || ||||| ||||| |||||
Sbjct 683 AGTTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGAATCCCTTCCTTGTCTTGG 742
Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353
||||| || | | || | ||| |||| | || | || | || | || |||
Sbjct 743 ATCTTAGCGTTGACGTTATCGATGGTATCGGAGCTTTTCTCCTCAAGCGTGATGGTCTTG 802
Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
||||| || ||||| ||||||||||||||
Sbjct 803 CCGGTTAGGGTTTTCACAAAAATCTGCAT 831
>seq176217
Length=4970
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || || ||||| |||||||||||| | ||||| ||| || ||||| || ||
Sbjct 2778 GTTGACTCCTTTTGGATGTTGTAATCGGCAAGGGTACGGCCATCCTCGAGTTGCTTGCCG 2837
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| |||| || | || ||||| || ||||| ||||| ||||| ||||| |||
Sbjct 2838 GCAAAGATAAGCCTTTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCTTTG 2897
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | |||| ||||| | | |||||| |||| || | ||||| || ||||| |||
Sbjct 2898 ACGTTATCAATAGTGTCAGAGCTTTCGACCTCCAAAGTGATGGTTTTTCCTGTCAGGGTT 2957
Query 114366 TTTACAAAAATCTGCAT 114382
|| || || ||||||||
Sbjct 2958 TTCACGAAGATCTGCAT 2974
Score = 86.0 bits (94), Expect = 5e-12
Identities = 140/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 114186 GTAGATTCTTTTTGAATGTTGTAAT-CGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244
|| || || ||||| |||||||||| |||| | || | ||| || |||||||| ||
Sbjct 2322 GTCGACTCCTTTTGGATGTTGTAATCCGCT-AGGGTCCTCCCATCCTCCAGTTGTTTCCC 2380
Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304
||| |||| || | ||| |||||||| ||||| ||||| || || |||||| ||
Sbjct 2381 AGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATCCCTTCCTTATCTTGGATCTTTGCCTT 2440
Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364
| | |||| || |||| ||| || |||| || | || || ||||| |||||
Sbjct 2441 AACGTTATCAATTGTATCGGAACTTTCCACCTCCAAAGTGATGGTCTTCCCGGTGAGAGT 2500
Query 114365 TTTTACAAAAATCTGCATG 114383
||| || || || ||||||
Sbjct 2501 TTTCACGAATATTTGCATG 2519
>seq188063
Length=7454
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233
|| ||||| | || ||||| ||||| |||||||||||| | |||||| || ||
Sbjct 528 ACCAAATGGAGGGTGGATTCCTTTTGGATGTTGTAATCGGCAAGGGTACGACCGTCCTCG 587
Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293
||||| || || ||| ||||||| | || ||||| || ||||| ||||| |||||
Sbjct 588 AGTTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGAATCCCTTCCTTGTCTTGG 647
Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353
||||| ||| | | || | ||| || | | || | || | || | || |||
Sbjct 648 ATCTTAGCTTTGACGTTATCGATGGTATCAGAGCTTTTCTCCTCAAGCGTGATGGTCTTG 707
Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
||||| || ||||| || |||||||||||
Sbjct 708 CCGGTTAGGGTTTTCACGAAAATCTGCAT 736
>seq162333
Length=3517
Score = 91.5 bits (100), Expect = 1e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224
|| |||||||||||||| | || || || ||||| |||||||| || | ||| |||
Sbjct 3146 AGCCTCAAAACTAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCAAGAGTCCGA 3087
Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284
|||||| | |||||| |||||| | || | | |||||| || || |||||||||||
Sbjct 3086 CCATCTTCTAATTGTTTGCCAGCGAAAATCAATCTCTGTTGATCAGGTGGAATGCCTTCC 3027
Query 114285 TTGTC 114289
|||||
Sbjct 3026 TTGTC 3022
>seq101090
Length=1060
Score = 84.2 bits (92), Expect = 2e-11
Identities = 102/138 (74%), Gaps = 1/138 (1%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGT-AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC 114211
|| ||||| | | || |||||||||||||| | || || || ||||| |||||||| ||
Sbjct 169 ATTCCGCCCCCTGAGCCTCAAAACTAAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTC 228
Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271
| ||| ||| |||||| | |||||| |||||| | || | | ||| | || ||
Sbjct 229 CGCAAGAGTCCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAATCTTTGTGGATCAGG 288
Query 114272 AGGAATGCCTTCTTTGTC 114289
||||||||||| |||||
Sbjct 289 TGGAATGCCTTCCTTGTC 306
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419109282961236
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