Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq160375 111 1e-19 seq194317 105 6e-18 seq116321 104 2e-17 seq194543 100 2e-16 seq156113 98.7 8e-16 seq93507 98.7 8e-16 seq176217 95.1 1e-14 seq188063 93.3 4e-14 seq162333 91.5 1e-13 seq101090 84.2 2e-11 >seq160375 Length=3367 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | | || | ||| | || || ||||| |||||||||||||| Sbjct 13 ACCACCACGGAGACGGAGGACAAGATGCAGGGTGGACTCTTTCTGAATGTTGTAATCAGC 72 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||||| ||| ||||| || ||||||||| ||||||| | ||| || ||||| || Sbjct 73 CAAGGTACGGCCATCCTCAAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGATCCGGTGG 132 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 || || || || || ||||| || | | |||| ||||||| | || || Sbjct 133 GATCCCCTCCTTATCCTGGATCTTGGCCTTCACGTTGTCAATTGTGTCGGAGCTCTCAAC 192 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 |||| ||| | ||||||||||| || ||||| || || ||||||||| Sbjct 193 CTCCAAGGTGATGGTTTTGCCGGTGAGGGTTTTCACGAAGATCTGCATG 241 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || || |||| || ||||| || || ||||| ||||| || ||||| ||||||| Sbjct 488 ACCAAGTGTAGGGTGGATTCCTTCTGGATGTTATAATCAGCCAAGGTACGGCCATCTTCA 547 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 || || || || ||| ||||||| | ||| || ||||| || || || || ||||| Sbjct 548 AGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCCTGG 607 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 ||||| || | | || | |||||||| | || || |||| ||| | |||||| Sbjct 608 ATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCAACCTCCAAGGTGATGGTTTTG 667 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||||| || || ||||| |||||||| Sbjct 668 CCGGTCAAGGTCTTAACAAAGATCTGCAT 696 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || ||||||||||| || || ||||| ||| |||||||| || || Sbjct 728 GTGGATTCCTTCTGAATGTTGTAGTCAGCCAAGGTACGGCCATCCTCAAGTTGCTTTCCG 787 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| | ||| |||||||| || || || || ||||| ||||| || Sbjct 788 GCGAAGATGAGCCTCTGCTGGTCCGGTGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTG 847 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||||| | || || |||| || | || |||||||||| || Sbjct 848 ACGTTGTCGATGGTGTCGGAGCTCTCAACCTCCAAAGTGATTGTCTTGCCGGTCAAGGTC 907 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 908 TTCACAAAGATCTGCATG 925 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || || || | || || || || || ||||||||||| Sbjct 1151 ATACCACCACGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCA 1210 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||||| || || | ||| || |||||| | || || | ||| ||||| || Sbjct 1211 GCCAAGGTACGGCCGTCCTCCAATTGCTTTCCAGCGAAAATAAGCCTCTGCTGGTCTGGT 1270 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| ||| || || | | |||| |||||||| | ||| Sbjct 1271 GGGATTCCCTCCTTGTCTTGAATTTTAGCCTTCACGTTATCAATGGTGTCGGAGCTTTCC 1330 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || |||||||| || ||||| ||||| |||||||| Sbjct 1331 ACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 1380 >seq194317 Length=10706 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 ||| ||||| || || |||||||| ||| | ||| | || || || || || || Sbjct 1335 CGTGGATTCCTTCTGGATGTTGTAGTCGGCTAGAGTTCTTCCGTCCTCCAGCTGCTTGCC 1394 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| |||| || ||||||||||| || || |||||||||||||| |||||| ||| Sbjct 1395 GGCGAAGATAAGGCGCTGTTGGTCTGGTGGTATGCCTTCTTTGTCCTGGATCTTTGCTTT 1454 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | || | |||||| | |||||| || || | ||| | ||||| ||||| | || Sbjct 1455 GACATTGTCGATGGTGTCAGAGGATTCAACCTCTAGGGTTATGGTTTTCCCGGTTAAGGT 1514 Query 114365 TTTTACAAAAATCTGCAT 114382 ||| || || |||||||| Sbjct 1515 TTTGACGAAGATCTGCAT 1532 >seq116321 Length=1411 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || ||||||||||| || ||||| ||||||||| || || || Sbjct 1288 GTGGATTCCTTCTGGATGTTGTAATCAGCCAAGGTACGGCCATCTTCAAGCTGCTTTCCG 1229 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| | ||| || ||||| || || || || ||||| ||||| || Sbjct 1228 GCGAAGATGAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTG 1169 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||||| | ||||| |||| ||| | || || |||||||| || Sbjct 1168 ACGTTGTCAATGGTGTCGGAGCTCTCGACCTCCAAGGTAATGGTCTTTCCGGTCAGGGTC 1109 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 1108 TTGACGAAGATCTGCAT 1092 >seq194543 Length=10949 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || ||||| ||||| | | || | || | ||| || ||||| || |||||||||||| Sbjct 3255 ATGCCGCCGCGTAGACGGAGGACGAGGTGAAGCGTGGACTCTTTCTGTATGTTGTAATCG 3196 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| || || || ||||| ||||| |||| |||||||| || |||||| Sbjct 3195 GCGAGCGTACGGCCGTCCTCGAGCTGTTTTCCAGCAAAGATTAGACGCTGCTGATCCGGA 3136 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| || || |||||| ||| | | || | || |||| | |||| Sbjct 3135 GGGATTCCTTCCTTATCCTGGATCTTTGCTTTCACGTTGTCGATAGTATCGGAGCTTTCG 3076 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || || || || || ||||| || || |||||||| Sbjct 3075 ACCTCGAGGGTGATTGTCTTACCAGTTAGGGTTTTCACGAAGATCTGCAT 3026 >seq156113 Length=3066 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 114168 CTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACGAGA 114226 |||| || | ||| | ||| || || || || ||||| ||||| ||| | || || Sbjct 1100 CTCAGCACCAGATGCAACGTCGACTCCTTCTGGATGTTATAATCCGCT-AGGGTTCGCCC 1042 Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286 |||||| | ||| ||||||||| | || | ||||| || ||||||||||| ||||| || Sbjct 1041 ATCTTCCAATTGCTTACCAGCGAAAATCAACCGCTGCTGATCCGGAGGAATCCCTTCCTT 982 Query 114287 GTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCAC 114346 ||| || || |||| | || | || |||| | ||||| |||| ||| | Sbjct 981 GTCTTGGATTTTGGCCTTTACATTGTCGATAGTATCGGAGCTCTCGACTTCCAAGGTGAT 922 Query 114347 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||||||||| || ||||| || || |||||||| Sbjct 921 TGTTTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 886 >seq93507 Length=917 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || ||||| | || ||||| ||||| |||||||||||| | ||||| || ||| Sbjct 623 ACCAAATGGAGGGTGGATTCCTTTTGGATGTTGTAATCGGCAAGGGTACGGCCGTCCTCA 682 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 ||||| || || ||| ||||||| | || ||||| || ||||| ||||| ||||| Sbjct 683 AGTTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGAATCCCTTCCTTGTCTTGG 742 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 ||||| || | | || | ||| |||| | || | || | || | || ||| Sbjct 743 ATCTTAGCGTTGACGTTATCGATGGTATCGGAGCTTTTCTCCTCAAGCGTGATGGTCTTG 802 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| || ||||| |||||||||||||| Sbjct 803 CCGGTTAGGGTTTTCACAAAAATCTGCAT 831 >seq176217 Length=4970 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || ||||| |||||||||||| | ||||| ||| || ||||| || || Sbjct 2778 GTTGACTCCTTTTGGATGTTGTAATCGGCAAGGGTACGGCCATCCTCGAGTTGCTTGCCG 2837 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | || ||||| || ||||| ||||| ||||| ||||| ||| Sbjct 2838 GCAAAGATAAGCCTTTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCTTTG 2897 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| | | |||||| |||| || | ||||| || ||||| ||| Sbjct 2898 ACGTTATCAATAGTGTCAGAGCTTTCGACCTCCAAAGTGATGGTTTTTCCTGTCAGGGTT 2957 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 2958 TTCACGAAGATCTGCAT 2974 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAAT-CGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 || || || ||||| |||||||||| |||| | || | ||| || |||||||| || Sbjct 2322 GTCGACTCCTTTTGGATGTTGTAATCCGCT-AGGGTCCTCCCATCCTCCAGTTGTTTCCC 2380 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| |||| || | ||| |||||||| ||||| ||||| || || |||||| || Sbjct 2381 AGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATCCCTTCCTTATCTTGGATCTTTGCCTT 2440 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | |||| || |||| ||| || |||| || | || || ||||| ||||| Sbjct 2441 AACGTTATCAATTGTATCGGAACTTTCCACCTCCAAAGTGATGGTCTTCCCGGTGAGAGT 2500 Query 114365 TTTTACAAAAATCTGCATG 114383 ||| || || || |||||| Sbjct 2501 TTTCACGAATATTTGCATG 2519 >seq188063 Length=7454 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || ||||| | || ||||| ||||| |||||||||||| | |||||| || || Sbjct 528 ACCAAATGGAGGGTGGATTCCTTTTGGATGTTGTAATCGGCAAGGGTACGACCGTCCTCG 587 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 ||||| || || ||| ||||||| | || ||||| || ||||| ||||| ||||| Sbjct 588 AGTTGCTTTCCGGCGAAGATGAGTCTTTGCTGGTCTGGTGGAATCCCTTCCTTGTCTTGG 647 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 ||||| ||| | | || | ||| || | | || | || | || | || ||| Sbjct 648 ATCTTAGCTTTGACGTTATCGATGGTATCAGAGCTTTTCTCCTCAAGCGTGATGGTCTTG 707 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| || ||||| || ||||||||||| Sbjct 708 CCGGTTAGGGTTTTCACGAAAATCTGCAT 736 >seq162333 Length=3517 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 || |||||||||||||| | || || || ||||| |||||||| || | ||| ||| Sbjct 3146 AGCCTCAAAACTAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCAAGAGTCCGA 3087 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 |||||| | |||||| |||||| | || | | |||||| || || ||||||||||| Sbjct 3086 CCATCTTCTAATTGTTTGCCAGCGAAAATCAATCTCTGTTGATCAGGTGGAATGCCTTCC 3027 Query 114285 TTGTC 114289 ||||| Sbjct 3026 TTGTC 3022 >seq101090 Length=1060 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/138 (74%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGT-AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC 114211 || ||||| | | || |||||||||||||| | || || || ||||| |||||||| || Sbjct 169 ATTCCGCCCCCTGAGCCTCAAAACTAAATGAAGGGTTGACTCCTTTTGGATGTTGTAGTC 228 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 | ||| ||| |||||| | |||||| |||||| | || | | ||| | || || Sbjct 229 CGCAAGAGTCCGACCATCTTCCAATTGTTTGCCAGCGAAAATCAATCTTTGTGGATCAGG 288 Query 114272 AGGAATGCCTTCTTTGTC 114289 ||||||||||| ||||| Sbjct 289 TGGAATGCCTTCCTTGTC 306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419109282961236