Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq197427 255 1e-62 >seq197427 Length=19924 Score = 255 bits (282), Expect = 1e-62 Identities = 420/600 (70%), Gaps = 8/600 (1%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||||||||||||||| || ||| |||||||||||| |||||||||| Sbjct 14388 CTCGCCTTCTTCGCCGCCTCTGACGGTATCGTCTTGGAGAACCTGGCCGGCAGGTTCATG 14329 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || ||||| ||| |||||| | ||| ||||||||||| || ||||| |||||| Sbjct 14328 AAGGAGGTCCAGGTAGCTGAGGCCAGAGCCTTTTACGGCTTCCAAATCGCCATCGAGAAC 14269 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| || ||||| | ||||| | |||||||| |||| | |||| Sbjct 14268 ATCCACTCCGAAATGTACAGCCTCTTGCTCGAGTCGTACATCAAGGATTCTAACGAGAAG 14209 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 || |||| ||| | || || |||||||| || ||| | | |||||||| | ||||| Sbjct 14208 GACCGGCTTTTCCACGCGATCGAGACGATCCCTTGCGTGGAAAAGAAGGCCAAGTGGGCC 14149 Query 42663 CTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCC 42722 ||||| |||||||| || | || | |||| |||| | | || |||||| | | Sbjct 14148 CTCAAGTGGATCGACGGT---GGCGAGTCTTTCGCCGAGCGAATCGTTGCCTTTGCTTGC 14092 Query 42723 GTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTG 42782 ||||| || || |||||||| || |||| | | |||||||||||||| || | | Sbjct 14091 GTCGAAGGGATTTTCTTCTCCGGGAGCTTCTGCGCGATCTTCTGGCTCAAAAAGCGCGGG 14032 Query 42783 TCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGG 42842 | |||||| || | |||||||| ||||| | ||| || ||||| || |||| | Sbjct 14031 TTGATGCCTGGGTTGACCTTCTCCAACGAGTTGATCTCAAGAGACGAAGGCTTGCACTGC 13972 Query 42843 GACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTC 42902 || ||||||||| | |||| |||| || | || |||| ||||||| ||| Sbjct 13971 GATTTTGCCTGCTTGCTGT--ACGAG-TTGCTGACTCAGAAGCTGAGCGAGGAGCGAGTC 13915 Query 42903 CGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCC 42962 ||| || | | || || ||||||||||||| |||||| || | ||||| || Sbjct 13914 AGGGGAATTGTGGCCGATGCGGTGGAGATCGAGAGGGAGTTTGTCTGCGACGCGCTG-CC 13856 Query 42963 GTGT-CCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGA 43021 |||| | ||||| |||||||| ||| | ||| || | || || | | |||||| || Sbjct 13855 GTGTGCTCTGGTGGGCATGAATGGCGATTTGATGAGCCAATATATTGAATTCGTCGCTGA 13796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 941975955739280