Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq197427 255 1e-62
>seq197427
Length=19924
Score = 255 bits (282), Expect = 1e-62
Identities = 420/600 (70%), Gaps = 8/600 (1%)
Strand=Plus/Minus
Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482
|| ||||||||||||||||||||||| || ||| |||||||||||| ||||||||||
Sbjct 14388 CTCGCCTTCTTCGCCGCCTCTGACGGTATCGTCTTGGAGAACCTGGCCGGCAGGTTCATG 14329
Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542
|| ||||| ||| |||||| | ||| ||||||||||| || ||||| ||||||
Sbjct 14328 AAGGAGGTCCAGGTAGCTGAGGCCAGAGCCTTTTACGGCTTCCAAATCGCCATCGAGAAC 14269
Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602
| ||||| || ||||| | ||||| | |||||||| |||| | ||||
Sbjct 14268 ATCCACTCCGAAATGTACAGCCTCTTGCTCGAGTCGTACATCAAGGATTCTAACGAGAAG 14209
Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662
|| |||| ||| | || || |||||||| || ||| | | |||||||| | |||||
Sbjct 14208 GACCGGCTTTTCCACGCGATCGAGACGATCCCTTGCGTGGAAAAGAAGGCCAAGTGGGCC 14149
Query 42663 CTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCC 42722
||||| |||||||| || | || | |||| |||| | | || |||||| | |
Sbjct 14148 CTCAAGTGGATCGACGGT---GGCGAGTCTTTCGCCGAGCGAATCGTTGCCTTTGCTTGC 14092
Query 42723 GTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTG 42782
||||| || || |||||||| || |||| | | |||||||||||||| || | |
Sbjct 14091 GTCGAAGGGATTTTCTTCTCCGGGAGCTTCTGCGCGATCTTCTGGCTCAAAAAGCGCGGG 14032
Query 42783 TCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGG 42842
| |||||| || | |||||||| ||||| | ||| || ||||| || |||| |
Sbjct 14031 TTGATGCCTGGGTTGACCTTCTCCAACGAGTTGATCTCAAGAGACGAAGGCTTGCACTGC 13972
Query 42843 GACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTC 42902
|| ||||||||| | |||| |||| || | || |||| ||||||| |||
Sbjct 13971 GATTTTGCCTGCTTGCTGT--ACGAG-TTGCTGACTCAGAAGCTGAGCGAGGAGCGAGTC 13915
Query 42903 CGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCC 42962
||| || | | || || ||||||||||||| |||||| || | ||||| ||
Sbjct 13914 AGGGGAATTGTGGCCGATGCGGTGGAGATCGAGAGGGAGTTTGTCTGCGACGCGCTG-CC 13856
Query 42963 GTGT-CCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGA 43021
|||| | ||||| |||||||| ||| | ||| || | || || | | |||||| ||
Sbjct 13855 GTGTGCTCTGGTGGGCATGAATGGCGATTTGATGAGCCAATATATTGAATTCGTCGCTGA 13796
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 941975955739280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |