Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq156113 100 2e-16 seq194543 98.7 8e-16 seq18577 93.3 3e-14 seq181690 86.0 5e-12 >seq156113 Length=3066 Score = 100 bits (110), Expect = 2e-16 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || |||| || |||||||||||| | ||| ||||||||| ||||| ||||| || Sbjct 1112 CCACCCCTCAACCTCAGCACCAGATGCAACGTCGACTCCTTCTGGATGTTATAATCCGCT 1053 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | |||| | || ||||||||||| || || || |||| |||||||||||| || Sbjct 1052 AGGGTTCGCCCATCTTCCAATTGCTTACCAGCGAAAATCAACCGCTGCTGATCCGGAGGA 993 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGAT-TC 34076 | | || ||||| ||||| ||| || | || | | |||| | || | || Sbjct 992 ATCCCTTCCTTGTCTTGGATTTTGGCCTTTACATTG---TCGATAGTATC-GGAGCTCTC 937 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | ||| | || |||||||| |||||||| ||||| || ||||| ||||| Sbjct 936 GACTTCCAAGGTGATTGTTTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 886 >seq194543 Length=10949 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || |||| || |||||||||||| | ||| ||||||||| || || |||||||| Sbjct 3708 CCACCCCTCAACCTCAGCACCAGATGCAACGTCGACTCCTTCTGGATATTATAATCTGCT 3649 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | ||| | || ||||| ||||| |||||||| |||| ||||||||||| || Sbjct 3648 AGGGTCCGCCCATCTTCCAACTGCTTACCGGCAAAAATCAAACGCTGCTGATCTGGAGGA 3589 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGCA 34079 | | ||||| || ||||| ||| | | | | |||||| || | ||| Sbjct 3588 ATCCCTTCTTTATCTTGGATTTTGGCCTTGACATTATCGATAGTATCAG-AGCTCTCGAC 3530 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| | || |||||||| || || || ||||| || ||||||||||| Sbjct 3529 TTCCAAGGTAATTGTTTTGCCAGTAAGGGTTTTGACGAAGATTTGCAT 3482 >seq18577 Length=265 Score = 93.3 bits (102), Expect = 3e-14 Identities = 83/99 (84%), Gaps = 4/99 (4%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGT-AAGATCTAAGGAAC 114390 |||||||| |||||||||||||||| |||||||| ||| | ||| || ||||||||||| Sbjct 7 CATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAGAT-AGTCAACATCTAAGGAAC 65 Query 114391 CAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 | ||||||| || ||||||||||| || ||| ||||| Sbjct 66 CGTAACTGATTTAATGAGCCATTCGCAGTTTCGCCTTAA 104 Score = 93.3 bits (102), Expect = 3e-14 Identities = 83/99 (84%), Gaps = 4/99 (4%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGT-AAGATCTAAGGAAC 115587 |||||||| |||||||||||||||| |||||||| ||| | ||| || ||||||||||| Sbjct 7 CATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAGAT-AGTCAACATCTAAGGAAC 65 Query 115588 CAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 | ||||||| || ||||||||||| || ||| ||||| Sbjct 66 CGTAACTGATTTAATGAGCCATTCGCAGTTTCGCCTTAA 104 >seq181690 Length=5866 Score = 86.0 bits (94), Expect = 5e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||||| ||||| || |||||||||||||||||| || || || ||| Sbjct 2744 AGACGAAGCACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGCTAA-AGTCCT 2802 Query 33970 T-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | | || |||||||| || || ||||| |||| | |||||||||| ||| | | ||| Sbjct 2803 TCCATCCTCCAATTGTTTCCCTGCAAAGATCAACCTCTGCTGATCCGGCGGAATACCCTC 2862 Query 34029 TTTGTCCATAATTTTT 34044 |||||| ||||||| Sbjct 2863 CTTGTCCTGAATTTTT 2878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396093578042806