Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04]
200,203 sequences; 414,621,889 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq156113 100 2e-16
seq194543 98.7 8e-16
seq18577 93.3 3e-14
seq181690 86.0 5e-12
>seq156113
Length=3066
Score = 100 bits (110), Expect = 2e-16
Identities = 164/231 (71%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| || |||| || |||||||||||| | ||| ||||||||| ||||| ||||| ||
Sbjct 1112 CCACCCCTCAACCTCAGCACCAGATGCAACGTCGACTCCTTCTGGATGTTATAATCCGCT 1053
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020
| |||| | || ||||||||||| || || || |||| |||||||||||| ||
Sbjct 1052 AGGGTTCGCCCATCTTCCAATTGCTTACCAGCGAAAATCAACCGCTGCTGATCCGGAGGA 993
Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGAT-TC 34076
| | || ||||| ||||| ||| || | || | | |||| | || | ||
Sbjct 992 ATCCCTTCCTTGTCTTGGATTTTGGCCTTTACATTG---TCGATAGTATC-GGAGCTCTC 937
Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
| ||| | || |||||||| |||||||| ||||| || ||||| |||||
Sbjct 936 GACTTCCAAGGTGATTGTTTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 886
>seq194543
Length=10949
Score = 98.7 bits (108), Expect = 8e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| || |||| || |||||||||||| | ||| ||||||||| || || ||||||||
Sbjct 3708 CCACCCCTCAACCTCAGCACCAGATGCAACGTCGACTCCTTCTGGATATTATAATCTGCT 3649
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020
| ||| | || ||||| ||||| |||||||| |||| ||||||||||| ||
Sbjct 3648 AGGGTCCGCCCATCTTCCAACTGCTTACCGGCAAAAATCAAACGCTGCTGATCTGGAGGA 3589
Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGCA 34079
| | ||||| || ||||| ||| | | | | |||||| || | |||
Sbjct 3588 ATCCCTTCTTTATCTTGGATTTTGGCCTTGACATTATCGATAGTATCAG-AGCTCTCGAC 3530
Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
||| | || |||||||| || || || ||||| || |||||||||||
Sbjct 3529 TTCCAAGGTAATTGTTTTGCCAGTAAGGGTTTTGACGAAGATTTGCAT 3482
>seq18577
Length=265
Score = 93.3 bits (102), Expect = 3e-14
Identities = 83/99 (84%), Gaps = 4/99 (4%)
Strand=Plus/Plus
Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGT-AAGATCTAAGGAAC 114390
|||||||| |||||||||||||||| |||||||| ||| | ||| || |||||||||||
Sbjct 7 CATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAGAT-AGTCAACATCTAAGGAAC 65
Query 114391 CAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429
| ||||||| || ||||||||||| || ||| |||||
Sbjct 66 CGTAACTGATTTAATGAGCCATTCGCAGTTTCGCCTTAA 104
Score = 93.3 bits (102), Expect = 3e-14
Identities = 83/99 (84%), Gaps = 4/99 (4%)
Strand=Plus/Plus
Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGT-AAGATCTAAGGAAC 115587
|||||||| |||||||||||||||| |||||||| ||| | ||| || |||||||||||
Sbjct 7 CATGTATTAGCTCTAGAATTACCACAGTTATCCATGTAGAT-AGTCAACATCTAAGGAAC 65
Query 115588 CAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626
| ||||||| || ||||||||||| || ||| |||||
Sbjct 66 CGTAACTGATTTAATGAGCCATTCGCAGTTTCGCCTTAA 104
>seq181690
Length=5866
Score = 86.0 bits (94), Expect = 5e-12
Identities = 102/136 (75%), Gaps = 2/136 (1%)
Strand=Plus/Plus
Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969
|| || ||||||| ||||| || |||||||||||||||||| || || || |||
Sbjct 2744 AGACGAAGCACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGCTAA-AGTCCT 2802
Query 33970 T-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028
| | || |||||||| || || ||||| |||| | |||||||||| ||| | | |||
Sbjct 2803 TCCATCCTCCAATTGTTTCCCTGCAAAGATCAACCTCTGCTGATCCGGCGGAATACCCTC 2862
Query 34029 TTTGTCCATAATTTTT 34044
|||||| |||||||
Sbjct 2863 CTTGTCCTGAATTTTT 2878
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396093578042806
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |