Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq196719 86.0 1e-11 >seq196719 Length=14904 Score = 86.0 bits (94), Expect = 1e-11 Identities = 183/264 (69%), Gaps = 12/264 (5%) Strand=Plus/Plus Query 297514 GTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGA 297573 ||| ||||| || || || |||||||||||||| | || || || | | ||| ||| Sbjct 10557 GTTTATGTTGTTACTCCCCACATAATCCTGTGCCATACCAACAATTGTAC-TAGCA-AGA 10614 Query 297574 TGCT--TCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACC 297631 || |||||||| || || || |||||| | || ||||| |||||| ||||| Sbjct 10615 CTCTGCTCGCCATGATGGTAAGCCGAATGCTCAGATACATAACCAGAGAACTGAGCAACT 10674 Query 297632 TTCACGTCGGTCGTCAAA-TTGCGCTTGAAAG--CTGAATAT-ATCACTTTCCGTTGAGA 297687 || | || | | |||| ||||||||||||| | ||| | ||| |||| || Sbjct 10675 TTTGCTTCCTT-GACAAAGTTGCGCTTGAAAGAACAGAACAGGATC---TTCCTCTGTCC 10730 Query 297688 AGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGATCGTACCGCGAGAACAA 297747 ||||| ||||||||||| | ||| ||||| ||| | ||||| | ||| |||| Sbjct 10731 TGGTTTCAAACCATCAACCATCGAAGGAATTGATCGCTGAAGATCTGCCATCGAAAACAG 10790 Query 297748 AATAAGTTCCTTGTCGATGAAGTC 297771 ||||| ||||||| || ||||| Sbjct 10791 TATAAGCTCCTTGTTGACAAAGTC 10814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1100051001478050