Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq116321 107 2e-18 seq160375 105 7e-18 seq176217 100 3e-16 seq181690 98.7 1e-15 >seq116321 Length=1411 Score = 107 bits (118), Expect = 2e-18 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || | ||| | ||||||||| | || |||||| |||||||||||||| || Sbjct 1091 ACCACCCCTGAGACGGAGCACCAAATGAAGGGTAGACTCCTTCTGAATATTGTAATCGGC 1032 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || ||||| |||| || || || || || ||||| ||||| | ||||||||| | ||| Sbjct 1031 CAAGGTCCGACCGTCCTCGAGTTGTTTTCCGGCGAAGATGAGCCTCTGCTGGTCTGGTGG 972 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTC 42157 | | |||||||||| ||| || |||| | | | || || |||| || Sbjct 971 GATACCCTCCTTGTCCTGGATCTTAGCCTTGACGTTATCGATGGTATCTGAGCTC---TC 915 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || | |||||||| || || || | ||||| || ||||| ||||| Sbjct 914 CACCTCCAAAGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 864 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || || | ||| | |||||| || | ||| ||||| || || |||||||||||| Sbjct 1318 CCACCCCTCAGACGGAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGCC 1259 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | || || | || || |||||||| || ||||| ||||| | |||||| || | ||| Sbjct 1258 AAGGTACGGCCATCTTCAAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGTGGG 1199 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 42157 | | |||||||||| ||| || |||| ||| | | | ||||| |||| || Sbjct 1198 ATCCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTC---TC 1143 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | || ||||| || || || || ||||| || ||||| ||||| Sbjct 1142 GACCTCCAAGGTAATGGTCTTTCCGGTCAGGGTCTTGACGAAGATCTGCAT 1092 >seq160375 Length=3367 Score = 105 bits (116), Expect = 7e-18 Identities = 165/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || | ||| | |||||| || | ||| ||||| || || || |||||||| Sbjct 469 ACCACCCCTCAGACGGAGCACCAAGTGTAGGGTGGATTCCTTCTGGATGTTATAATCAGC 528 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || |||||||| || ||||| ||||| | |||||| || | ||| Sbjct 529 CAAGGTACGGCCATCTTCAAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGTGG 588 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCG---CTCGATT 42156 | | |||||||||| ||| || |||| ||| | | | |||||| ||| | Sbjct 589 GATCCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTC---T 644 Query 42157 CCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || | |||||||||||||| || | ||||| |||||||| ||||| Sbjct 645 CAACCTCCAAGGTGATGGTTTTGCCGGTCAAGGTCTTAACAAAGATCTGCAT 696 Score = 105 bits (116), Expect = 7e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| || | ||| |||||| || || ||||||||||||| || || | Sbjct 1165 ACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCCAAGGTACGGCC 1224 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || | ||||| |||||||| || || | ||||||||| | ||| | | |||||| Sbjct 1225 GTCCTCCAATTGCTTTCCAGCGAAAATAAGCCTCTGCTGGTCTGGTGGGATTCCCTCCTT 1284 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 || | ||| |||| | || | | | | |||||| |||||| || | |||| Sbjct 1285 GT-CTTGAATTTTAGCCTTCACGTTATCAATGGTGTCGGAGCTTTCCACCTCCAAGGTGA 1343 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| ||||| || || || || |||||||| ||||| Sbjct 1344 TGGTCTTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 1380 Score = 104 bits (114), Expect = 3e-17 Identities = 150/208 (72%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 42005 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 42064 ||||| ||| ||| || ||||| ||||||||||||| || || | || || ||||| Sbjct 37 ATGCAGGGTGGACTCTTTCTGAATGTTGTAATCAGCCAAGGTACGGCCATCCTCAAGCTG 96 Query 42065 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 |||||||||||| ||||| | |||||| || | ||| | | |||||| ||| ||| || Sbjct 97 CTTACCAGCGAAGATGAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTATCCTGGATCTT 156 Query 42125 TTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGC 42180 || | ||| | | | ||||| |||| || || || | ||||||||||||| Sbjct 157 GGCCTTCA-CGTTGTCAATTGTGTCGGAGCTC---TCAACCTCCAAGGTGATGGTTTTGC 212 Query 42181 CCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || || || || ||||| ||||| Sbjct 213 CGGTGAGGGTTTTCACGAAGATCTGCAT 240 >seq176217 Length=4970 Score = 100 bits (110), Expect = 3e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| | ||| | ||||||||| | ||| |||||||| ||||||||||| || Sbjct 2520 CCACCTCTGAGACGGAGCACCAAATGGAGGGTGGATTCCTTTTGGATATTGTAATCGGCA 2579 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || |||| || || ||||| || || || || || | |||||||| | || Sbjct 2580 AGGGTACGGCCGTCCTCGAGTTGCTTGCCGGCAAAAATAAGCCTTTGCTGGTCTGGGGGA 2639 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 42158 | | ||||||||| ||| || ||||| | | | ||||| ||| ||| Sbjct 2640 ATTCCTTCCTTGTCCTGGATCTTAGCTTTGACGTTATCAATTGTGTCAGAGCT---TTCG 2696 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | ||||||||||| || || || ||||| || || |||||||| Sbjct 2697 ACCTCTAAAGTGATGGTTTTTCCTGTCAGGGTCTTCACGAATATTTGCAT 2746 >seq181690 Length=5866 Score = 98.7 bits (108), Expect = 1e-15 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || |||||||||| ||||| || | || |||||||||||||||||||| || Sbjct 2962 ACCGCCCCTTAAACGCAGAACCAAGTGAAGGGTCGATTCCTTTTGAATATTGTAATCCGC 3021 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || |||| || ||||| || ||||| || || || | |||||||| | ||| Sbjct 3022 AAGGGTGCGTCCGTCTTCAAGCTGTTTTCCAGCAAAGATAAGCCTTTGCTGGTCTGGTGG 3081 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA---TTC 42157 | | |||||| | | ||| | |||| | | ||| | || | || | ||| || Sbjct 3082 GATCCCCTCCTTAT-CTTGAATCTTTGCCTTAACGTTGTCAATG-GTATC-CGAACTCTC 3138 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || | || ||||| || || || || || || ||||| |||||||| Sbjct 3139 CACTTCAAGGGTTATGGTCTTCCCTGTGAGGGTTTTCACAAATATTTGCAT 3189 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | ||| | |||||||| | || ||||||||| |||||||||||||| Sbjct 3190 ACCGCCTCTGAGACGAAGAACCAAATGAAGGGTCGACTCCTTTTGGATATTGTAATCAGC 3249 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || |||| | | || || | ||| || || || || || || | |||||||| | || Sbjct 3250 TAGGGTCCTCCCATCCTCCAACTGTTTCCCTGCAAAGATAAGCCTTTGCTGGTCTGGGGG 3309 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA---TTC 42157 | | |||||| | | ||| | |||| | | ||| | || | || | ||| || Sbjct 3310 GATCCCCTCCTTAT-CTTGAATCTTTGCCTTAACGTTGTCAATG-GTATC-CGAACTCTC 3366 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || | || ||||| || || || || || || ||||| |||||||| Sbjct 3367 CACCTCAAGGGTTATGGTCTTCCCTGTGAGGGTTTTCACAAATATTTGCAT 3417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541853389597520